Variant report

Variant	rs9382596
Chromosome Location	chr6:56107886-56107887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56105700..56109003-chr6:56111761..56115485,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124749	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11757974	1.00[LWK][hapmap];0.87[MKK][hapmap];0.83[TSI][hapmap]
rs13195010	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13202214	0.83[TSI][hapmap]
rs13219390	0.81[TSI][hapmap]
rs1925159	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2397215	1.00[LWK][hapmap]
rs4119564	0.83[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4119565	0.83[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4544909	1.00[LWK][hapmap]
rs724678	0.85[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9349805	1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9370499	0.81[AMR][1000 genomes]
rs9396184	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56100200-56111600	Weak transcription	Right Atrium	heart
2	chr6:56100600-56109400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:56103600-56111600	Weak transcription	Left Ventricle	heart
4	chr6:56104200-56110400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:56104800-56109000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:56106000-56111400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:56106200-56109000	Enhancers	Liver	Liver
8	chr6:56106200-56110000	Enhancers	Fetal Lung	lung
9	chr6:56106200-56110200	Weak transcription	Fetal Stomach	stomach
10	chr6:56106200-56111000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:56106200-56111600	Weak transcription	Ovary	ovary
12	chr6:56106400-56109800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:56106400-56111600	Weak transcription	Psoas Muscle	Psoas
14	chr6:56106600-56108000	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:56106600-56108000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr6:56106600-56108800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:56106600-56110400	Weak transcription	HSMMtube	muscle
18	chr6:56106600-56111000	Weak transcription	Brain Hippocampus Middle	brain
19	chr6:56106600-56111600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:56106600-56112000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:56106800-56108800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:56107000-56108400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr6:56107000-56111400	Weak transcription	Brain Substantia Nigra	brain
24	chr6:56107200-56111200	Enhancers	Colon Smooth Muscle	Colon
25	chr6:56107400-56108200	Enhancers	A549	lung
26	chr6:56107400-56108400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:56107400-56108400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:56107400-56108400	Weak transcription	Aorta	Aorta
29	chr6:56107400-56108600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:56107400-56109000	Weak transcription	NHEK	skin
31	chr6:56107400-56109600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:56107400-56109600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:56107400-56110400	Weak transcription	Fetal Kidney	kidney
34	chr6:56107400-56111800	Weak transcription	HMEC	breast
35	chr6:56107600-56109000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr6:56107800-56108600	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr6:56107800-56110000	Enhancers	Primary monocytes fromperipheralblood	blood

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