Variant report

Variant	rs9383881
Chromosome Location	chr6:150187175-150187176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:150186687-150187676	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:150156036..150158963-chr6:150184147..150187311,3	MCF-7	breast:
2	chr6:150183161..150188305-chr6:150206346..150214162,9	MCF-7	breast:
3	chr6:150184661..150189239-chr6:150198084..150201371,4	MCF-7	breast:
4	chr6:150186409..150189034-chr6:150239066..150241266,2	MCF-7	breast:
5	chr6:150167839..150171816-chr6:150186693..150189063,3	K562	blood:
6	chr2:174828821..174830614-chr6:150186810..150189334,2	MCF-7	breast:
7	chr6:150186302..150188604-chr6:150204580..150207263,3	MCF-7	breast:
8	chr6:150181490..150187274-chr6:150243970..150248410,8	MCF-7	breast:
9	chr6:150168942..150171816-chr6:150186693..150188431,2	K562	blood:

No data

Variant related genes	Relation type
LRP11	TF binding region
ENSG00000120256	Chromatin interaction
ENSG00000203722	Chromatin interaction
ENSG00000223701	Chromatin interaction
ENSG00000217733	Chromatin interaction
ENSG00000164520	Chromatin interaction
ENSG00000172845	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73779598	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73782103	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762285	0.82[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv3437961	chr6:150182459-150187257	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150185800-150189200	Weak transcription	Gastric	stomach
2	chr6:150186000-150189200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:150186200-150188800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:150186200-150189000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:150186200-150189000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:150186200-150189000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:150186200-150189000	Weak transcription	NHLF	lung
8	chr6:150186200-150189200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:150186200-150189200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:150186200-150189200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:150186200-150189200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:150186200-150189200	Weak transcription	NHEK	skin
13	chr6:150186200-150189400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:150186200-150189600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:150186200-150189600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr6:150186200-150189800	Weak transcription	Ovary	ovary
17	chr6:150186200-150190000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:150186200-150194400	Weak transcription	Pancreas	Pancrea
19	chr6:150186400-150187800	Enhancers	K562	blood
20	chr6:150186400-150189000	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr6:150186400-150189000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:150186400-150189000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:150186400-150189000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:150186400-150189000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:150186400-150189000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:150186400-150189400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr6:150186400-150189400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:150186600-150188200	Weak transcription	Dnd41	blood
29	chr6:150186600-150188800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:150186600-150188800	Weak transcription	HMEC	breast
31	chr6:150186600-150189000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr6:150186600-150189000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:150186600-150189000	Weak transcription	Hela-S3	cervix
34	chr6:150186600-150189000	Weak transcription	HepG2	liver
35	chr6:150186600-150189000	Weak transcription	NHDF-Ad	bronchial
36	chr6:150186600-150189400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:150186600-150189400	Weak transcription	Liver	Liver
38	chr6:150186800-150189000	Weak transcription	A549	lung

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