Variant report

Variant	rs7762285
Chromosome Location	chr6:150247274-150247275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:57)
CpG islands
(count:122)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:57 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr6:150247163-150247775	MCF-7	breast:	n/a	n/a
2	RAD21	chr6:150247159-150247892	HCT-116	colon:	n/a	n/a
3	RAD21	chr6:150247199-150247749	HepG2	liver:	n/a	n/a
4	RAD21	chr6:150247144-150247931	HCT-116	colon:	n/a	n/a
5	POLR2A	chr6:150247094-150247577	HUVEC	blood vessel:	n/a	n/a
6	YY1	chr6:150247206-150247644	HepG2	liver:	n/a	n/a
7	CTCF	chr6:150247261-150247647	MCF-7	breast:	n/a	n/a
8	CTCF	chr6:150247190-150247800	HCT-116	colon:	n/a	n/a
9	POLR2A	chr6:150247235-150247536	U87	brain:	n/a	n/a
10	RAD21	chr6:150247256-150247668	HepG2	liver:	n/a	n/a
11	POLR2A	chr6:150247233-150247559	K562	blood:	n/a	n/a
12	POLR2A	chr6:150247073-150247696	U87	brain:	n/a	n/a
13	CTCF	chr6:150247265-150247683	K562	blood:	n/a	n/a
14	YY1	chr6:150247165-150247666	H1-hESC	embryonic stem cell:	n/a	n/a
15	CTCF	chr6:150247258-150247677	ECC-1	luminal epithelium:	n/a	n/a
16	SUZ12	chr6:150246418-150247513	H1-hESC	embryonic stem cell:	n/a	n/a
17	CTCF	chr6:150247166-150247952	SK-N-SH	brain:	n/a	n/a
18	MAZ	chr6:150246587-150248252	IMR90	lung:	n/a	n/a
19	CTCF	chr6:150247263-150247726	IMR90	lung:	n/a	n/a
20	RAD21	chr6:150247194-150247717	H1-hESC	embryonic stem cell:	n/a	n/a
21	RAD21	chr6:150247213-150247746	IMR90	lung:	n/a	n/a
22	POLR2A	chr6:150247214-150247569	HepG2	liver:	n/a	n/a
23	MYBL2	chr6:150247091-150247676	HepG2	liver:	n/a	n/a
24	CTCF	chr6:150247094-150248180	A549	lung:	n/a	chr6:150247128-150247135
25	POLR2A	chr6:150247242-150247545	MCF-7	breast:	n/a	n/a
26	YY1	chr6:150247270-150247680	SK-N-SH_RA	brain:	n/a	n/a
27	CTCF	chr6:150247264-150247842	K562	blood:	n/a	n/a
28	POLR2A	chr6:150247243-150247580	HepG2	liver:	n/a	n/a
29	HEY1	chr6:150247210-150247582	K562	blood:	n/a	n/a
30	MAZ	chr6:150247269-150247685	K562	blood:	n/a	n/a
31	CTCF	chr6:150247151-150247746	MCF-7	breast:	n/a	n/a
32	JUN	chr6:150246987-150247928	K562	blood:	n/a	n/a
33	CTCF	chr6:150247262-150247725	H1-hESC	embryonic stem cell:	n/a	n/a
34	TEAD4	chr6:150247256-150247669	K562	blood:	n/a	n/a
35	SMC3	chr6:150247259-150247702	Hela-S3	cervix:	n/a	n/a
36	CEBPD	chr6:150247257-150247659	HepG2	liver:	n/a	n/a
37	POLR2A	chr6:150247247-150247517	SK-N-SH	brain:	n/a	n/a
38	RAD21	chr6:150247259-150247621	H1-hESC	embryonic stem cell:	n/a	n/a
39	MAX	chr6:150247150-150247618	K562	blood:	n/a	n/a
40	MBD4	chr6:150247082-150247587	HepG2	liver:	n/a	n/a
41	POLR2A	chr6:150247262-150247499	ECC-1	luminal epithelium:	n/a	n/a
42	TEAD4	chr6:150247234-150247785	HepG2	liver:	n/a	n/a
43	RAD21	chr6:150247222-150247798	A549	lung:	n/a	n/a
44	SIN3A	chr6:150247194-150247700	H1-hESC	embryonic stem cell:	n/a	chr6:150247381-150247392
45	RAD21	chr6:150247218-150247781	MCF-7	breast:	n/a	n/a
46	RAD21	chr6:150247023-150247974	SK-N-SH	brain:	n/a	n/a
47	POLR2A	chr6:150247093-150247655	ProgFib	skin:	n/a	n/a
48	UBTF	chr6:150247199-150247669	K562	blood:	n/a	n/a
49	RAD21	chr6:150247211-150247669	SK-N-SH_RA	brain:	n/a	n/a
50	ZNF263	chr6:150246987-150247678	HEK293-T-REx	kidney:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:150247246-150247296	AG09319	gingival:	n/a
2	chr6:150247246-150247296	Jurkat	blood:	n/a
3	chr6:150247246-150247296	MCF-7	breast:	n/a
4	chr6:150247256-150247306	SK-N-SH_RA	brain:	n/a
5	chr6:150247246-150247296	Hela-S3	cervix:	n/a
6	chr6:150247246-150247296	U87	brain:	n/a
7	chr6:150247256-150247306	AG09319	gingival:	n/a
8	chr6:150247246-150247296	GM12892	blood:	n/a
9	chr6:150247246-150247296	GM19239	blood:	n/a
10	chr6:150247246-150247296	PrEC	prostate:	n/a
11	chr6:150247256-150247306	SAEC	small airway:	n/a
12	chr6:150247246-150247296	GM06990	blood:	n/a
13	chr6:150247256-150247306	Hela-S3	cervix:	n/a
14	chr6:150247246-150247296	Caco-2	colon:	n/a
15	chr6:150247256-150247306	AG04449	skin:	fetal
16	chr6:150247256-150247306	NT2-D1	testis:	n/a
17	chr6:150247256-150247306	Hepatocyte	liver:	n/a
18	chr6:150247256-150247306	HCF	heart:	n/a
19	chr6:150247246-150247296	NHBE	bronchial:	n/a
20	chr6:150247256-150247306	PANC-1	pancreas:	n/a
21	chr6:150247256-150247306	GM06990	blood:	n/a
22	chr6:150247256-150247306	SKMC	muscle:	n/a
23	chr6:150247246-150247296	AG10803	skin:	n/a
24	chr6:150247246-150247296	HepG2	liver:	n/a
25	chr6:150247246-150247296	SK-N-SH	brain:	n/a
26	chr6:150247246-150247296	H1-hESC	embryonic stem cell:	embryo
27	chr6:150247246-150247296	ovcar-3	ovarian:	n/a
28	chr6:150247246-150247296	ProgFib	skin:	n/a
29	chr6:150247246-150247296	HRCEpiC	kidney:	n/a
30	chr6:150247246-150247296	HPAEpiC	pulmonary alveolar:	n/a
31	chr6:150247256-150247306	ovcar-3	ovarian:	n/a
32	chr6:150247256-150247306	HNPCEpiC	eye:	n/a
33	chr6:150247256-150247306	MCF10A-Er-Src	breast:	n/a
34	chr6:150247246-150247296	CMK	blood:	n/a
35	chr6:150247256-150247306	NHBE	bronchial:	n/a
36	chr6:150247246-150247296	IMR90	lung:	fetal
37	chr6:150247256-150247306	U87	brain:	n/a
38	chr6:150247256-150247306	SK-N-SH	brain:	n/a
39	chr6:150247246-150247296	Hepatocyte	liver:	n/a
40	chr6:150247256-150247306	HCPEpiC	choroid plexus:	n/a
41	chr6:150247246-150247296	SK-N-MC	brain:	n/a
42	chr6:150247246-150247296	GM12891	blood:	n/a
43	chr6:150247246-150247296	A549	lung:	n/a
44	chr6:150247256-150247306	HEEpiC	esophagus:	n/a
45	chr6:150247256-150247306	HL-60	blood:	n/a
46	chr6:150247246-150247296	HNPCEpiC	eye:	n/a
47	chr6:150247246-150247296	ECC-1	luminal epithelium:	n/a
48	chr6:150247256-150247306	HepG2	liver:	n/a
49	chr6:150247246-150247296	MCF10A-Er-Src	breast:	n/a
50	chr6:150247246-150247296	T-47D	breast:	n/a

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:150155818..150157641-chr6:150245238..150247988,3	MCF-7	breast:
2	chr6:149867194..149867778-chr6:150247038..150247929,2	MCF-7	breast:
3	chr6:150155636..150156273-chr6:150247223..150247832,2	MCF-7	breast:
4	chr6:150239646..150241708-chr6:150246246..150248253,2	K562	blood:
5	chr6:150155341..150156327-chr6:150247051..150248024,4	K562	blood:
6	chr6:150181490..150187274-chr6:150243970..150248410,8	MCF-7	breast:
7	chr6:150044112..150046636-chr6:150245149..150247881,2	MCF-7	breast:
8	chr6:150155297..150157506-chr6:150246299..150249094,2	K562	blood:
9	chr6:150243800..150245856-chr6:150245979..150247636,2	MCF-7	breast:
10	chr6:150161696..150162308-chr6:150247065..150247811,2	MCF-7	breast:
11	chr6:150154902..150156132-chr6:150246873..150248035,8	MCF-7	breast:
12	chr6:150246157..150249113-chr6:150336737..150339289,2	K562	blood:
13	chr6:150153805..150156797-chr6:150246692..150249094,2	K562	blood:

No data

Variant related genes	Relation type
RAET1G	TF binding region
RAET1G	CpG island
ENSG00000203722	Chromatin interaction
ENSG00000120256	Chromatin interaction
ENSG00000268592	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9383881	0.82[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1817805	chr6:150209592-150268708	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150242800-150247800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr6:150246400-150247400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr6:150246400-150247600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:150246400-150247600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:150246400-150247600	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr6:150246400-150247600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:150246400-150247600	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
8	chr6:150246400-150247600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
9	chr6:150246400-150247800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
10	chr6:150246600-150247400	Active TSS	Right Atrium	heart
11	chr6:150246600-150247400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
12	chr6:150246600-150247600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
13	chr6:150246600-150247600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
14	chr6:150246600-150247600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:150246600-150247600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:150246600-150247600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
17	chr6:150246600-150247600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
18	chr6:150246600-150247600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
19	chr6:150246600-150247600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:150246600-150247600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
21	chr6:150246600-150247600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:150246600-150247600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:150246600-150247600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:150246600-150247600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
25	chr6:150246600-150247600	Active TSS	Brain Angular Gyrus	brain
26	chr6:150246600-150247600	Bivalent/Poised TSS	Brain Anterior Caudate	brain
27	chr6:150246600-150247600	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
28	chr6:150246600-150247600	Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr6:150246600-150247600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
30	chr6:150246600-150247600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
31	chr6:150246600-150247600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
32	chr6:150246600-150247600	Active TSS	Placenta Amnion	Placenta Amnion
33	chr6:150246600-150247600	Active TSS	Rectal Smooth Muscle	rectum
34	chr6:150246600-150247800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
35	chr6:150246600-150247800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:150246600-150247800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:150246600-150247800	Active TSS	Pancreatic Islets	Pancreatic Islet
38	chr6:150246600-150248000	Active TSS	Colon Smooth Muscle	Colon
39	chr6:150246600-150248000	Flanking Active TSS	Stomach Smooth Muscle	stomach
40	chr6:150246800-150247400	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:150246800-150247400	Active TSS	Aorta	Aorta
42	chr6:150246800-150247400	Active TSS	Brain Substantia Nigra	brain
43	chr6:150246800-150247400	Flanking Active TSS	Placenta	Placenta
44	chr6:150246800-150247400	Bivalent/Poised TSS	Stomach Mucosa	stomach
45	chr6:150246800-150247400	Flanking Active TSS	HMEC	breast
46	chr6:150246800-150247600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr6:150246800-150247600	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr6:150246800-150247600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr6:150246800-150247600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:150246800-150247600	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood

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