Variant report

Variant	rs9384189
Chromosome Location	chr6:150476319-150476320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150469308..150480268-chr6:150484066..150492629,15	K562	blood:
2	chr6:150475010..150477072-chr6:150477573..150480562,2	K562	blood:
3	chr6:150462370..150464017-chr6:150474588..150477355,2	K562	blood:
4	chr6:150472442..150474765-chr6:150475018..150477880,4	K562	blood:
5	chr6:150472260..150480045-chr6:150481720..150491899,15	K562	blood:
6	chr6:150471157..150474765-chr6:150475895..150479622,5	K562	blood:

Variant related genes	Relation type
ENSG00000238594	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17079361	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9371787	0.81[CHD][hapmap]
rs9384191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9384196	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1026690	chr6:150419115-150485583	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150470000-150476800	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:150472400-150476400	Enhancers	Rectal Mucosa Donor 29	rectum
3	chr6:150472800-150477000	Enhancers	Fetal Heart	heart
4	chr6:150473400-150476800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:150473600-150476600	Enhancers	Primary hematopoietic stem cells	blood
6	chr6:150473600-150479200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:150474200-150485800	Weak transcription	Left Ventricle	heart
8	chr6:150474200-150493600	Weak transcription	Right Ventricle	heart
9	chr6:150474400-150482000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:150474800-150476600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:150474800-150476600	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr6:150474800-150478400	Weak transcription	Primary T cells from cord blood	blood
13	chr6:150474800-150478600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:150475000-150478600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr6:150475400-150479200	Enhancers	HMEC	breast
16	chr6:150475600-150479200	Enhancers	K562	blood
17	chr6:150475800-150477800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:150476000-150476600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr6:150476000-150477800	Enhancers	NHEK	skin
20	chr6:150476000-150478000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:150476000-150490600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:150476200-150476800	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr6:150476200-150478000	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links