Variant report

Variant	rs9388608
Chromosome Location	chr6:128300146-128300147
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2064388	0.83[EUR][1000 genomes]
rs6569519	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7749132	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7749500	0.86[EUR][1000 genomes]
rs7772658	1.00[CEU][hapmap]
rs9321104	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9398863	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9402010	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9491896	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9491897	1.00[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604642	chr6:128278798-128351143	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128280400-128304600	Weak transcription	Fetal Brain Male	brain
2	chr6:128285600-128307400	Weak transcription	Aorta	Aorta
3	chr6:128287000-128300200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:128287200-128309000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:128287600-128308600	Weak transcription	Esophagus	oesophagus
6	chr6:128287800-128303600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:128288000-128304800	Weak transcription	Stomach Mucosa	stomach
8	chr6:128288000-128307600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:128288600-128305400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:128288600-128306800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:128288600-128321800	Weak transcription	Small Intestine	intestine
12	chr6:128288800-128303800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:128289000-128302200	Weak transcription	Brain Germinal Matrix	brain
14	chr6:128289000-128431000	Weak transcription	Psoas Muscle	Psoas
15	chr6:128290000-128308200	Strong transcription	HepG2	liver
16	chr6:128291200-128304400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:128291800-128302200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:128292400-128306400	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr6:128292400-128307600	Strong transcription	Liver	Liver
20	chr6:128292600-128307000	Strong transcription	Duodenum Mucosa	Duodenum
21	chr6:128293000-128303800	Weak transcription	Spleen	Spleen
22	chr6:128293000-128305400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr6:128293600-128374400	Weak transcription	Pancreas	Pancrea
24	chr6:128293800-128307800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:128294000-128306200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:128294200-128300800	Weak transcription	Right Ventricle	heart
27	chr6:128294400-128302200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr6:128294400-128302400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr6:128294400-128330600	Weak transcription	NHDF-Ad	bronchial
30	chr6:128295000-128302600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr6:128295000-128304200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:128296000-128303800	Weak transcription	A549	lung
33	chr6:128296000-128307000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:128296600-128300800	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr6:128296600-128302600	Strong transcription	Osteobl	bone
36	chr6:128296600-128303400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:128296600-128305000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:128296800-128300800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:128296800-128300800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:128296800-128307200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr6:128296800-128307600	Strong transcription	Fetal Intestine Large	intestine
42	chr6:128297000-128300400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:128297000-128300400	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr6:128297000-128301000	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr6:128297000-128304400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr6:128297200-128300800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:128297200-128301000	Strong transcription	Stomach Smooth Muscle	stomach
48	chr6:128297200-128301200	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr6:128297200-128301200	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr6:128297200-128307200	Strong transcription	HSMMtube	muscle

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