Variant report

Variant	rs9491896
Chromosome Location	chr6:128300949-128300950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17055210	0.91[JPT][hapmap]
rs2064388	0.92[EUR][1000 genomes]
rs6569519	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7749132	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7749500	0.95[EUR][1000 genomes]
rs7772658	1.00[CEU][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs9321104	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs9375545	0.84[ASN][1000 genomes]
rs9385445	0.95[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs9388608	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9398863	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs9402010	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9402012	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9491897	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604642	chr6:128278798-128351143	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128280400-128304600	Weak transcription	Fetal Brain Male	brain
2	chr6:128285600-128307400	Weak transcription	Aorta	Aorta
3	chr6:128287200-128309000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:128287600-128308600	Weak transcription	Esophagus	oesophagus
5	chr6:128287800-128303600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:128288000-128304800	Weak transcription	Stomach Mucosa	stomach
7	chr6:128288000-128307600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:128288600-128305400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:128288600-128306800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:128288600-128321800	Weak transcription	Small Intestine	intestine
11	chr6:128288800-128303800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:128289000-128302200	Weak transcription	Brain Germinal Matrix	brain
13	chr6:128289000-128431000	Weak transcription	Psoas Muscle	Psoas
14	chr6:128290000-128308200	Strong transcription	HepG2	liver
15	chr6:128291200-128304400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:128291800-128302200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:128292400-128306400	Strong transcription	Rectal Mucosa Donor 31	rectum
18	chr6:128292400-128307600	Strong transcription	Liver	Liver
19	chr6:128292600-128307000	Strong transcription	Duodenum Mucosa	Duodenum
20	chr6:128293000-128303800	Weak transcription	Spleen	Spleen
21	chr6:128293000-128305400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr6:128293600-128374400	Weak transcription	Pancreas	Pancrea
23	chr6:128293800-128307800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:128294000-128306200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:128294400-128302200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr6:128294400-128302400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr6:128294400-128330600	Weak transcription	NHDF-Ad	bronchial
28	chr6:128295000-128302600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:128295000-128304200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:128296000-128303800	Weak transcription	A549	lung
31	chr6:128296000-128307000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:128296600-128302600	Strong transcription	Osteobl	bone
33	chr6:128296600-128303400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:128296600-128305000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:128296800-128307200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr6:128296800-128307600	Strong transcription	Fetal Intestine Large	intestine
37	chr6:128297000-128301000	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr6:128297000-128304400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr6:128297200-128301000	Strong transcription	Stomach Smooth Muscle	stomach
40	chr6:128297200-128301200	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr6:128297200-128301200	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr6:128297200-128307200	Strong transcription	HSMMtube	muscle
43	chr6:128297400-128334000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:128297800-128304600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr6:128297800-128308200	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr6:128297800-128312600	Weak transcription	Colonic Mucosa	Colon
47	chr6:128298000-128302000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr6:128298000-128302200	Weak transcription	Fetal Muscle Trunk	muscle
49	chr6:128298000-128302400	Weak transcription	Brain Anterior Caudate	brain
50	chr6:128298000-128303800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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