Variant report

Variant	rs9388659
Chromosome Location	chr6:128990824-128990825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs12191852	0.82[ASN][1000 genomes]
rs12194587	0.84[ASN][1000 genomes]
rs12212602	0.80[ASN][1000 genomes]
rs12663546	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1361592	0.83[ASN][1000 genomes]
rs1361593	0.83[ASN][1000 genomes]
rs1508436	0.84[ASN][1000 genomes]
rs17056397	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17056422	0.81[JPT][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2064584	0.83[ASN][1000 genomes]
rs2064585	0.83[ASN][1000 genomes]
rs2096099	0.84[ASN][1000 genomes]
rs2202776	0.84[ASN][1000 genomes]
rs2326743	0.82[CEU][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs472588	0.84[ASN][1000 genomes]
rs478551	0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs478649	0.84[ASN][1000 genomes]
rs479187	0.84[ASN][1000 genomes]
rs480169	0.82[ASN][1000 genomes]
rs4895836	0.82[ASN][1000 genomes]
rs4897272	0.83[ASN][1000 genomes]
rs525293	0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs545332	0.81[ASN][1000 genomes]
rs546085	0.82[ASN][1000 genomes]
rs551729	0.82[ASN][1000 genomes]
rs572745	0.83[ASN][1000 genomes]
rs573382	0.81[ASN][1000 genomes]
rs6569553	0.83[ASN][1000 genomes]
rs6569554	0.83[ASN][1000 genomes]
rs6911163	0.83[ASN][1000 genomes]
rs6911735	0.83[ASN][1000 genomes]
rs6911931	0.83[ASN][1000 genomes]
rs6926043	0.83[ASN][1000 genomes]
rs6927678	0.82[ASN][1000 genomes]
rs6933496	0.92[EUR][1000 genomes]
rs6934363	0.83[ASN][1000 genomes]
rs6934365	0.83[ASN][1000 genomes]
rs699425	0.84[ASN][1000 genomes]
rs699426	0.84[ASN][1000 genomes]
rs774284	0.82[JPT][hapmap]
rs774290	0.80[ASN][1000 genomes]
rs774291	0.81[ASN][1000 genomes]
rs7744000	0.83[ASN][1000 genomes]
rs7748045	0.83[ASN][1000 genomes]
rs7748311	0.83[ASN][1000 genomes]
rs7748702	0.83[ASN][1000 genomes]
rs7752709	0.82[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs7753865	0.83[ASN][1000 genomes]
rs7754832	0.83[ASN][1000 genomes]
rs7768942	0.83[ASN][1000 genomes]
rs7771467	0.83[ASN][1000 genomes]
rs7775324	0.81[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs7775662	0.81[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs9321126	0.85[ASN][1000 genomes]
rs9375590	0.83[ASN][1000 genomes]
rs9375591	0.83[ASN][1000 genomes]
rs9388662	0.83[ASN][1000 genomes]
rs9388663	0.83[ASN][1000 genomes]
rs9402063	0.82[ASN][1000 genomes]
rs972997	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv830801	chr6:128878436-129064667	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2630065	chr6:128989165-128990843	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128988800-128993400	Weak transcription	Fetal Heart	heart

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