Variant report

Variant	rs9321126
Chromosome Location	chr6:128989792-128989793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128988503..128990321-chr6:128993921..128996723,2	MCF-7	breast:

Extended variants
information (count: 142 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs10485164	0.86[ASN][1000 genomes]
rs12191852	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12194587	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12201837	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12212602	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1396299	0.87[ASN][1000 genomes]
rs1396300	0.87[ASN][1000 genomes]
rs1396301	0.87[ASN][1000 genomes]
rs1396302	0.87[ASN][1000 genomes]
rs1396303	0.87[ASN][1000 genomes]
rs1396304	0.87[ASN][1000 genomes]
rs1508436	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1508437	0.86[ASN][1000 genomes]
rs1508438	0.86[ASN][1000 genomes]
rs1508439	0.86[ASN][1000 genomes]
rs1508440	0.86[ASN][1000 genomes]
rs2063207	0.86[ASN][1000 genomes]
rs2064581	0.83[ASN][1000 genomes]
rs2064582	0.83[ASN][1000 genomes]
rs2064583	0.86[ASN][1000 genomes]
rs2096099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2153707	0.92[EUR][1000 genomes]
rs2174934	0.86[ASN][1000 genomes]
rs2202776	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2326737	0.85[ASN][1000 genomes]
rs2326739	0.86[ASN][1000 genomes]
rs2326740	0.86[ASN][1000 genomes]
rs2326741	0.86[ASN][1000 genomes]
rs2326742	0.86[ASN][1000 genomes]
rs4457181	0.86[ASN][1000 genomes]
rs471145	0.85[ASN][1000 genomes]
rs472588	0.99[ASN][1000 genomes]
rs478551	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs478649	0.98[ASN][1000 genomes]
rs479187	0.99[ASN][1000 genomes]
rs479357	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs479641	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs480169	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs482607	0.85[ASN][1000 genomes]
rs485179	0.83[ASN][1000 genomes]
rs4895836	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4895837	0.86[ASN][1000 genomes]
rs4897267	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs4897270	0.86[ASN][1000 genomes]
rs497668	0.83[ASN][1000 genomes]
rs506953	0.84[ASN][1000 genomes]
rs508972	0.85[ASN][1000 genomes]
rs521638	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs525293	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs528060	0.86[ASN][1000 genomes]
rs529678	0.84[ASN][1000 genomes]
rs532291	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs542404	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs542925	1.00[CEU][hapmap];0.80[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs545102	0.87[ASN][1000 genomes]
rs545332	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs546085	0.95[ASN][1000 genomes]
rs551729	0.95[ASN][1000 genomes]
rs562490	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs565485	0.85[ASN][1000 genomes]
rs565685	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs572745	0.98[ASN][1000 genomes]
rs575131	0.84[ASN][1000 genomes]
rs57744071	0.81[ASN][1000 genomes]
rs61613152	0.86[ASN][1000 genomes]
rs62425863	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62427801	0.85[ASN][1000 genomes]
rs6569540	0.88[ASN][1000 genomes]
rs6569541	0.86[ASN][1000 genomes]
rs6569542	0.87[ASN][1000 genomes]
rs6569543	0.83[ASN][1000 genomes]
rs6569544	0.86[ASN][1000 genomes]
rs6569545	0.86[ASN][1000 genomes]
rs6569546	0.86[ASN][1000 genomes]
rs6569547	0.86[ASN][1000 genomes]
rs6569548	0.86[ASN][1000 genomes]
rs6569549	0.83[ASN][1000 genomes]
rs6569550	0.83[ASN][1000 genomes]
rs6569551	0.83[ASN][1000 genomes]
rs6569552	0.83[ASN][1000 genomes]
rs6899438	0.83[ASN][1000 genomes]
rs6899472	0.83[ASN][1000 genomes]
rs6899518	0.86[ASN][1000 genomes]
rs6899718	0.86[ASN][1000 genomes]
rs6899904	0.83[ASN][1000 genomes]
rs6911133	0.85[ASN][1000 genomes]
rs6919933	0.86[ASN][1000 genomes]
rs6926043	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6927434	0.86[ASN][1000 genomes]
rs6927678	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6935888	0.86[ASN][1000 genomes]
rs6936447	0.86[ASN][1000 genomes]
rs6937636	0.86[ASN][1000 genomes]
rs6938304	0.86[ASN][1000 genomes]
rs6938488	0.83[ASN][1000 genomes]
rs6938701	0.86[ASN][1000 genomes]
rs699424	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs699425	0.99[ASN][1000 genomes]
rs699426	0.99[ASN][1000 genomes]
rs7753787	0.85[ASN][1000 genomes]
rs7757306	0.84[ASN][1000 genomes]
rs7757503	0.84[ASN][1000 genomes]
rs7771173	0.81[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs7773822	0.87[ASN][1000 genomes]
rs7775324	0.81[CHB][hapmap]
rs7775662	0.82[CHB][hapmap]
rs9321128	0.88[ASN][1000 genomes]
rs9321129	0.86[ASN][1000 genomes]
rs9372899	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9372900	0.86[ASN][1000 genomes]
rs9375584	0.92[EUR][1000 genomes]
rs9375587	0.85[ASN][1000 genomes]
rs9375588	0.86[ASN][1000 genomes]
rs9385470	0.86[ASN][1000 genomes]
rs9388658	1.00[CEU][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9388659	0.85[ASN][1000 genomes]
rs9398879	0.86[ASN][1000 genomes]
rs9402063	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9402064	0.86[ASN][1000 genomes]
rs9402065	0.87[ASN][1000 genomes]
rs9402066	0.84[ASN][1000 genomes]
rs9402067	0.86[ASN][1000 genomes]
rs9492049	0.87[ASN][1000 genomes]
rs9492052	0.81[ASN][1000 genomes]
rs972997	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv830801	chr6:128878436-129064667	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2630065	chr6:128989165-128990843	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv2183109	chr6:128989632-128990360	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3473328	chr6:128989698-128990249	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv9089	chr6:128989710-128990403	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv3516640	chr6:128989729-128990250	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv3516636	chr6:128989730-128990257	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv3516637	chr6:128989745-128990187	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv3473327	chr6:128989750-128990241	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv3473325	chr6:128989759-128990213	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv3473329	chr6:128989765-128990174	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv4212	chr6:128989770-128990198	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv3516642	chr6:128989770-128990212	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv3516638	chr6:128989774-128990194	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv3329905	chr6:128989790-128990182	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128988800-128993400	Weak transcription	Fetal Heart	heart

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