Variant report

Variant	rs7771173
Chromosome Location	chr6:128977480-128977481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:128840482..128843039-chr6:128977011..128979027,2	MCF-7	breast:
2	chr6:128834236..128836341-chr6:128977205..128979332,2	MCF-7	breast:
3	chr6:128975771..128978222-chr6:129045702..129048467,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152894	Chromatin interaction

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10485164	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11154445	0.94[EUR][1000 genomes]
rs12191852	0.84[ASN][1000 genomes]
rs12194587	0.85[ASN][1000 genomes]
rs12212602	0.80[ASN][1000 genomes]
rs1341590	0.94[EUR][1000 genomes]
rs1341593	0.96[CEU][hapmap]
rs1396299	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1396300	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1396301	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1396302	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1396303	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1396304	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1508436	0.83[ASN][1000 genomes]
rs1508437	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1508438	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1508439	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1508440	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2063207	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2064581	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2064582	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2064583	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2096099	0.84[ASN][1000 genomes]
rs2153706	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2174934	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2202776	0.84[ASN][1000 genomes]
rs2326737	1.00[ASN][1000 genomes]
rs2326739	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2326740	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2326741	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2326742	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4457181	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs471145	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs472588	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs478551	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs478649	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs479187	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs479357	0.99[ASN][1000 genomes]
rs479641	0.99[ASN][1000 genomes]
rs480169	0.83[ASN][1000 genomes]
rs482607	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs485179	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4895836	0.84[ASN][1000 genomes]
rs4895837	0.93[EUR][1000 genomes]
rs4897267	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897270	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs497668	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs506953	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs508972	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs521638	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs525293	1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs528060	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs529678	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs532291	0.99[ASN][1000 genomes]
rs542404	0.98[ASN][1000 genomes]
rs542925	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs545102	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs545332	0.83[ASN][1000 genomes]
rs546085	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs551729	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs562490	0.99[ASN][1000 genomes]
rs565485	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs565685	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs572745	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs575131	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57744071	0.88[EUR][1000 genomes]
rs61613152	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62427801	1.00[ASN][1000 genomes]
rs6569540	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6569541	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6569542	0.91[EUR][1000 genomes]
rs6569543	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6569544	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6569545	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6569546	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6569547	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6569548	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6569549	0.92[EUR][1000 genomes]
rs6569550	0.92[EUR][1000 genomes]
rs6569551	0.92[EUR][1000 genomes]
rs6569552	0.92[EUR][1000 genomes]
rs6899438	0.92[EUR][1000 genomes]
rs6899472	0.92[EUR][1000 genomes]
rs6899518	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6899718	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6899904	0.92[EUR][1000 genomes]
rs6909897	0.85[CEU][hapmap]
rs6911133	1.00[ASN][1000 genomes]
rs6919812	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6919933	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6926043	0.83[ASN][1000 genomes]
rs6927434	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6927678	0.83[ASN][1000 genomes]
rs6935888	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6936447	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6937636	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6938304	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6938488	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6938701	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs699424	0.99[ASN][1000 genomes]
rs699425	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs699426	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7753787	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757306	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7757503	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7773822	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9321126	0.85[ASN][1000 genomes]
rs9321128	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9321129	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9372900	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9375587	0.91[EUR][1000 genomes]
rs9375588	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9375589	0.92[EUR][1000 genomes]
rs9385470	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9388658	0.96[JPT][hapmap];0.96[ASN][1000 genomes]
rs9398879	0.92[EUR][1000 genomes]
rs9402063	0.84[ASN][1000 genomes]
rs9402064	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9402065	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9402066	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9402067	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9492031	0.96[CEU][hapmap]
rs9492049	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9492052	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs969970	0.82[ASN][1000 genomes]
rs972997	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv830801	chr6:128878436-129064667	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128975600-128981000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:128976000-128979000	Enhancers	HUVEC	blood vessel
3	chr6:128976400-128978400	Enhancers	HSMM	muscle
4	chr6:128976600-128977600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:128976600-128978400	Enhancers	HMEC	breast
6	chr6:128976600-128978800	Enhancers	Osteobl	bone
7	chr6:128976800-128977600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:128976800-128978000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:128976800-128978000	Enhancers	Hela-S3	cervix
10	chr6:128976800-128978400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:128976800-128978400	Enhancers	NHLF	lung
12	chr6:128977000-128977600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:128977000-128977600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:128977000-128977800	Enhancers	A549	lung
15	chr6:128977000-128978000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:128977000-128978000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:128977000-128979000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:128977200-128977600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:128977200-128977600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:128977200-128977600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr6:128977200-128977600	Enhancers	Stomach Mucosa	stomach
22	chr6:128977200-128978000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:128977200-128978000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:128977200-128978400	Enhancers	NH-A	brain
25	chr6:128977200-128980400	Weak transcription	Fetal Heart	heart
26	chr6:128977400-128978200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:128977400-128978400	Enhancers	HSMMtube	muscle
28	chr6:128977400-128978600	Enhancers	NHDF-Ad	bronchial
29	chr6:128977400-128978800	Enhancers	Muscle Satellite Cultured Cells	--
30	chr6:128977400-128979000	Enhancers	NHEK	skin
31	chr6:128977400-128980800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:128977400-128982000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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