Variant report
| Variant | rs969970 |
|---|---|
| Chromosome Location | chr6:128950400-128950401 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs17056145 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2326737 | 0.82[ASN][1000 genomes] |
| rs471145 | 0.81[ASN][1000 genomes] |
| rs478551 | 0.86[JPT][hapmap] |
| rs479357 | 0.81[ASN][1000 genomes] |
| rs479641 | 0.81[ASN][1000 genomes] |
| rs482607 | 0.81[ASN][1000 genomes] |
| rs4897267 | 0.80[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs508972 | 0.81[ASN][1000 genomes] |
| rs525293 | 0.86[JPT][hapmap] |
| rs532291 | 0.81[ASN][1000 genomes] |
| rs542404 | 0.80[ASN][1000 genomes] |
| rs542925 | 0.84[CHB][hapmap];0.98[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs562490 | 0.81[ASN][1000 genomes] |
| rs565485 | 0.81[ASN][1000 genomes] |
| rs565685 | 0.85[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap] |
| rs575131 | 0.81[ASN][1000 genomes] |
| rs62427801 | 0.82[ASN][1000 genomes] |
| rs6911133 | 0.82[ASN][1000 genomes] |
| rs699424 | 0.81[ASN][1000 genomes] |
| rs7753787 | 0.82[ASN][1000 genomes] |
| rs7771173 | 0.85[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs9388658 | 0.86[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs981598 | 0.83[AMR][1000 genomes];0.99[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1020071 | chr6:128579774-129048919 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv538441 | chr6:128579774-129048919 | Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 3 | nsv830801 | chr6:128878436-129064667 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:128948000-128951200 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 2 | chr6:128950400-128953000 | Enhancers | Fetal Heart | heart |
