Variant report

Variant	rs9388808
Chromosome Location	chr6:130901240-130901241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10872372	0.85[EUR][1000 genomes]
rs1203340	0.82[EUR][1000 genomes]
rs1203341	0.82[EUR][1000 genomes]
rs1203343	0.82[EUR][1000 genomes]
rs1203344	0.84[EUR][1000 genomes]
rs1203345	0.84[EUR][1000 genomes]
rs1203346	0.84[EUR][1000 genomes]
rs1203347	0.84[EUR][1000 genomes]
rs1203348	0.84[EUR][1000 genomes]
rs12526873	0.83[EUR][1000 genomes]
rs12665689	0.88[ASN][1000 genomes]
rs1316493	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1316537	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1316538	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1317232	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1933757	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1933759	0.84[EUR][1000 genomes]
rs2876084	0.84[EUR][1000 genomes]
rs4144216	0.85[EUR][1000 genomes]
rs4895886	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4895887	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4895888	0.80[ASN][1000 genomes]
rs4897437	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4897439	0.90[ASN][1000 genomes]
rs4897440	0.85[ASN][1000 genomes]
rs6569688	0.84[EUR][1000 genomes]
rs6569690	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6899678	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6932172	0.85[EUR][1000 genomes]
rs6932344	0.88[EUR][1000 genomes]
rs6932512	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6940599	0.84[EUR][1000 genomes]
rs71543277	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72988212	0.90[ASN][1000 genomes]
rs766966	0.84[EUR][1000 genomes]
rs766967	0.84[EUR][1000 genomes]
rs7744825	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7768049	0.85[EUR][1000 genomes]
rs9321234	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9321236	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9321238	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9321239	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9321241	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9372966	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9372967	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9372968	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9375740	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9375741	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9375742	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9385548	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9388806	0.80[AMR][1000 genomes]
rs9402246	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9402247	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9402248	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9483145	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9492649	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv427767	chr6:130875056-131008620	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv5475	chr6:130880169-130924850	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:130900000-130906800	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr6:130900400-130905800	Weak transcription	Liver	Liver
3	chr6:130900600-130909200	Weak transcription	NHLF	lung

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