Variant report

Variant	rs12665689
Chromosome Location	chr6:130900404-130900405
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1316493	0.80[ASN][1000 genomes]
rs1316537	0.80[ASN][1000 genomes]
rs1316538	0.80[ASN][1000 genomes]
rs1317232	0.80[ASN][1000 genomes]
rs17059212	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1933757	0.80[ASN][1000 genomes]
rs2209147	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2326913	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4895888	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4897437	0.80[ASN][1000 genomes]
rs4897438	0.85[ASN][1000 genomes]
rs4897439	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4897440	0.82[ASN][1000 genomes]
rs56019502	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62431563	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62431565	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62431566	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6899678	0.81[ASN][1000 genomes]
rs72988212	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7451336	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7452034	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7744825	0.80[ASN][1000 genomes]
rs7754423	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9321238	0.81[ASN][1000 genomes]
rs9321239	0.81[ASN][1000 genomes]
rs9321241	0.81[ASN][1000 genomes]
rs9372966	0.80[ASN][1000 genomes]
rs9375740	0.80[ASN][1000 genomes]
rs9375741	0.80[ASN][1000 genomes]
rs9375742	0.87[ASN][1000 genomes]
rs9385545	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9385546	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9388808	0.88[ASN][1000 genomes]
rs9402247	0.80[ASN][1000 genomes]
rs9402248	0.80[ASN][1000 genomes]
rs9483145	0.81[ASN][1000 genomes]
rs9492649	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv427767	chr6:130875056-131008620	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv5475	chr6:130880169-130924850	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:130900000-130906800	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr6:130900400-130905800	Weak transcription	Liver	Liver

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