Variant report

Variant	rs9390016
Chromosome Location	chr6:142969570-142969571
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13202642	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1770771	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4512243	0.82[ASN][1000 genomes]
rs6902754	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6906818	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6908599	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6924380	0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6928084	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7740440	0.96[ASN][1000 genomes]
rs7740684	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9496433	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142967200-142973600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:142967200-142973600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr6:142967200-142975800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:142967400-142971800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:142967600-142971200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:142967800-142969600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr6:142968000-142972800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:142968200-142970000	Enhancers	Fetal Lung	lung
9	chr6:142968400-142973200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:142968600-142970000	Enhancers	HepG2	liver
11	chr6:142968800-142969600	Enhancers	Duodenum Mucosa	Duodenum
12	chr6:142969000-142969600	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr6:142969000-142969800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:142969000-142969800	Enhancers	Primary T cells from cord blood	blood
15	chr6:142969000-142969800	Enhancers	Fetal Intestine Large	intestine
16	chr6:142969200-142969600	Active TSS	Fetal Brain Male	brain
17	chr6:142969200-142970000	Weak transcription	Pancreas	Pancrea
18	chr6:142969400-142969800	Active TSS	Liver	Liver
19	chr6:142969400-142973400	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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