Variant report

Variant	rs13202642
Chromosome Location	chr6:142960190-142960191
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:142959399..142961716-chr6:143264721..143266278,2	MCF-7	breast:
2	chr6:142959534..142961116-chr6:142964658..142966443,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs166399	0.87[EUR][1000 genomes]
rs1770771	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs185523	0.81[EUR][1000 genomes]
rs187809	0.89[EUR][1000 genomes]
rs263102	0.89[EUR][1000 genomes]
rs263125	0.89[EUR][1000 genomes]
rs263127	0.89[EUR][1000 genomes]
rs263132	0.81[EUR][1000 genomes]
rs263137	0.81[EUR][1000 genomes]
rs263138	0.81[EUR][1000 genomes]
rs263139	0.81[EUR][1000 genomes]
rs263140	0.81[EUR][1000 genomes]
rs263142	0.81[EUR][1000 genomes]
rs263143	0.81[EUR][1000 genomes]
rs263144	0.81[EUR][1000 genomes]
rs263145	0.81[EUR][1000 genomes]
rs263146	0.81[EUR][1000 genomes]
rs263147	0.81[EUR][1000 genomes]
rs263148	0.81[EUR][1000 genomes]
rs263149	0.81[EUR][1000 genomes]
rs263151	0.81[EUR][1000 genomes]
rs263161	0.85[EUR][1000 genomes]
rs6570521	0.90[EUR][1000 genomes]
rs6902754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6906818	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6908599	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6924380	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6928084	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7740440	0.91[ASN][1000 genomes]
rs7740684	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9390016	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9496433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142959200-142960400	Weak transcription	Fetal Lung	lung
2	chr6:142959400-142967200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:142960000-142967200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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