Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13202642	1.00[CEU][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes]
rs166399	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1770771	1.00[CEU][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes]
rs185523	0.81[EUR][1000 genomes]
rs187809	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2077836	0.99[ASN][1000 genomes]
rs263102	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs263124	0.88[ASN][1000 genomes]
rs263125	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs263126	0.88[ASN][1000 genomes]
rs263127	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs263130	0.97[ASN][1000 genomes]
rs263131	0.86[ASN][1000 genomes]
rs263137	0.80[EUR][1000 genomes]
rs263138	0.80[EUR][1000 genomes]
rs263139	0.81[EUR][1000 genomes]
rs263140	0.81[EUR][1000 genomes]
rs263142	0.81[EUR][1000 genomes]
rs263143	0.81[EUR][1000 genomes]
rs263144	0.81[EUR][1000 genomes]
rs263145	0.81[EUR][1000 genomes]
rs263146	0.80[EUR][1000 genomes]
rs263147	0.80[EUR][1000 genomes]
rs263148	0.81[EUR][1000 genomes]
rs263149	0.81[EUR][1000 genomes]
rs263151	0.81[EUR][1000 genomes]
rs6902754	1.00[CEU][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes]
rs6908599	0.85[EUR][1000 genomes]
rs6924380	0.94[JPT][hapmap]
rs6928084	0.85[EUR][1000 genomes]
rs9373355	0.86[ASN][1000 genomes]
rs9496433	1.00[CEU][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023426	chr6:142813845-142940262	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142917800-142920400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:142918400-142919600	Enhancers	Fetal Lung	lung
3	chr6:142918800-142919200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:142918800-142919200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:142918800-142919400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:142918800-142919600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:142919000-142919200	Bivalent/Poised TSS	Osteobl	bone
8	chr6:142919000-142919400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:142919000-142919400	Flanking Active TSS	Primary T cells from cord blood	blood
10	chr6:142919000-142919600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr6:142919000-142920200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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