Variant report
| Variant | rs263126 |
|---|---|
| Chromosome Location | chr6:142935915-142935916 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs166399 | 0.90[ASN][1000 genomes] |
| rs166401 | 0.81[EUR][1000 genomes] |
| rs183799 | 0.81[EUR][1000 genomes] |
| rs187809 | 0.87[ASN][1000 genomes] |
| rs187810 | 0.81[EUR][1000 genomes] |
| rs190522 | 0.81[EUR][1000 genomes] |
| rs190523 | 0.81[EUR][1000 genomes] |
| rs2077836 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs263102 | 0.89[ASN][1000 genomes] |
| rs263103 | 0.81[EUR][1000 genomes] |
| rs263104 | 0.81[EUR][1000 genomes] |
| rs263105 | 0.81[EUR][1000 genomes] |
| rs263107 | 0.81[EUR][1000 genomes] |
| rs263115 | 0.82[EUR][1000 genomes] |
| rs263116 | 0.81[EUR][1000 genomes] |
| rs263119 | 0.82[EUR][1000 genomes] |
| rs263122 | 0.84[EUR][1000 genomes] |
| rs263124 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs263125 | 0.99[ASN][1000 genomes] |
| rs263127 | 0.99[ASN][1000 genomes] |
| rs263130 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs263131 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs263155 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs263156 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs263161 | 0.88[ASN][1000 genomes] |
| rs263165 | 0.82[EUR][1000 genomes] |
| rs263167 | 0.81[EUR][1000 genomes] |
| rs263168 | 0.80[EUR][1000 genomes] |
| rs263171 | 0.81[EUR][1000 genomes] |
| rs263174 | 0.81[EUR][1000 genomes] |
| rs6924380 | 0.89[EUR][1000 genomes] |
| rs839554 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs9373355 | 0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949088 | chr6:142561402-143128849 | Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1023426 | chr6:142813845-142940262 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv830827 | chr6:142840734-143015005 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:142933600-142944000 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 2 | chr6:142934000-142938000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
