Variant report

Variant	rs263130
Chromosome Location	chr6:142928295-142928296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs13202642	1.00[JPT][hapmap]
rs166399	0.98[ASN][1000 genomes]
rs166401	0.84[EUR][1000 genomes]
rs1770771	1.00[JPT][hapmap]
rs183799	0.84[EUR][1000 genomes]
rs187809	0.96[ASN][1000 genomes]
rs187810	0.84[EUR][1000 genomes]
rs190522	0.84[EUR][1000 genomes]
rs190523	0.84[EUR][1000 genomes]
rs196353	0.82[EUR][1000 genomes]
rs2077836	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs263102	0.98[ASN][1000 genomes]
rs263103	0.85[EUR][1000 genomes]
rs263104	0.85[EUR][1000 genomes]
rs263105	0.85[EUR][1000 genomes]
rs263107	0.85[EUR][1000 genomes]
rs263113	0.83[EUR][1000 genomes]
rs263115	0.86[EUR][1000 genomes]
rs263116	0.84[EUR][1000 genomes]
rs263119	0.86[EUR][1000 genomes]
rs263122	0.88[EUR][1000 genomes]
rs263124	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs263125	0.91[ASN][1000 genomes]
rs263126	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs263127	0.91[ASN][1000 genomes]
rs263131	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs263155	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs263156	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs263161	0.97[ASN][1000 genomes]
rs263165	0.86[EUR][1000 genomes]
rs263167	0.85[EUR][1000 genomes]
rs263168	0.84[EUR][1000 genomes]
rs263171	0.84[EUR][1000 genomes]
rs263172	0.83[EUR][1000 genomes]
rs263174	0.84[EUR][1000 genomes]
rs263176	0.82[EUR][1000 genomes]
rs605790	0.83[EUR][1000 genomes]
rs6902754	1.00[JPT][hapmap]
rs6924380	0.82[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs839554	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs839556	0.84[EUR][1000 genomes]
rs9373355	0.86[ASN][1000 genomes]
rs9496433	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023426	chr6:142813845-142940262	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs263130	GRM1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142927800-142933200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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