Variant report

Variant	rs9390150
Chromosome Location	chr6:144309600-144309601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144305516..144307905-chr6:144308755..144311303,2	K562	blood:
2	chr6:144308289..144311855-chr6:144313891..144316861,3	K562	blood:

Variant related genes	Relation type
ENSG00000118495	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11155338	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs2092894	0.93[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2224152	0.86[CEU][hapmap];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2268448	0.88[EUR][1000 genomes]
rs9321953	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs9321956	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373409	0.85[CEU][hapmap];0.83[YRI][hapmap];0.87[EUR][1000 genomes]
rs9376802	0.84[ASN][1000 genomes]
rs9376803	1.00[YRI][hapmap]
rs9386053	0.92[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9390147	0.93[CEU][hapmap];0.82[YRI][hapmap];0.93[EUR][1000 genomes]
rs9390148	0.92[CEU][hapmap];0.95[YRI][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9399468	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs9403540	0.92[CEU][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9403542	1.00[YRI][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3522138	chr6:144174685-144367463	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3522139	chr6:144174685-144367463	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv5516	chr6:144300321-144345812	Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144284800-144318400	Weak transcription	Aorta	Aorta
2	chr6:144288400-144314800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:144293600-144309800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:144294800-144312200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:144294800-144313600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:144294800-144315600	Weak transcription	NHDF-Ad	bronchial
7	chr6:144295000-144312600	Weak transcription	Fetal Intestine Small	intestine
8	chr6:144303400-144312800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:144304800-144310200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:144304800-144310600	Weak transcription	Fetal Stomach	stomach
11	chr6:144305000-144317200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:144305000-144327400	Weak transcription	Fetal Kidney	kidney
13	chr6:144305000-144327400	Weak transcription	Fetal Lung	lung
14	chr6:144305200-144310400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:144305200-144310600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:144305200-144313400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:144305800-144310400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr6:144306600-144327400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:144307800-144309800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:144308000-144309800	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:144309000-144310800	Strong transcription	Fetal Muscle Trunk	muscle
22	chr6:144309000-144327400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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