Variant report

Variant	rs9403542
Chromosome Location	chr6:144305568-144305569
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144286646..144289265-chr6:144304089..144305699,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11155338	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2092894	1.00[YRI][hapmap]
rs9321956	0.82[AFR][1000 genomes]
rs9373409	0.83[YRI][hapmap]
rs9376803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9386053	0.80[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs9390147	0.82[YRI][hapmap]
rs9390148	0.95[YRI][hapmap]
rs9390150	1.00[YRI][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3522138	chr6:144174685-144367463	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3522139	chr6:144174685-144367463	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv5516	chr6:144300321-144345812	Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144284800-144318400	Weak transcription	Aorta	Aorta
2	chr6:144288400-144314800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:144293600-144309800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:144294800-144312200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:144294800-144313600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:144294800-144315600	Weak transcription	NHDF-Ad	bronchial
7	chr6:144295000-144312600	Weak transcription	Fetal Intestine Small	intestine
8	chr6:144302400-144305800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr6:144302800-144307600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:144303400-144312800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:144304400-144306400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:144304600-144306400	Enhancers	Fetal Intestine Large	intestine
13	chr6:144304800-144310200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:144304800-144310600	Weak transcription	Fetal Stomach	stomach
15	chr6:144305000-144307200	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:144305000-144317200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:144305000-144327400	Weak transcription	Fetal Kidney	kidney
18	chr6:144305000-144327400	Weak transcription	Fetal Lung	lung
19	chr6:144305200-144309000	Weak transcription	Fetal Muscle Trunk	muscle
20	chr6:144305200-144310400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:144305200-144310600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:144305200-144313400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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