Variant report

Variant	rs9390242
Chromosome Location	chr6:145193884-145193885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11546879	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13204600	0.82[EUR][1000 genomes]
rs13208561	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13212915	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13213382	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13218938	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1856418	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2297844	0.82[AMR][1000 genomes]
rs35415004	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36083145	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4495289	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4642498	0.86[ASN][1000 genomes]
rs9373431	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9390240	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9399508	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9399509	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9399513	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9403616	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv886740	chr6:145105354-145199259	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv464070	chr6:145184504-145214952	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv604823	chr6:145184504-145214952	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv432966	chr6:145191307-145201307	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145189400-145194400	Weak transcription	Osteobl	bone
2	chr6:145189600-145195400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:145192200-145194400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:145192400-145194400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:145192600-145194200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:145192800-145194200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:145193400-145194400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:145193800-145195000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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