Variant report

Variant	rs11546879
Chromosome Location	chr6:145172505-145172506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145164758..145167653-chr6:145170294..145172652,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs13195905	0.82[JPT][hapmap]
rs13204600	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13208561	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13210728	0.82[JPT][hapmap]
rs13212915	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13213382	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13218938	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17074210	1.00[YRI][hapmap]
rs17074224	1.00[YRI][hapmap]
rs1856418	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2297844	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2297845	0.86[JPT][hapmap];0.80[EUR][1000 genomes]
rs2297846	0.88[CEU][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs35415004	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36083145	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4476850	0.82[JPT][hapmap]
rs4495289	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4642498	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4896746	1.00[YRI][hapmap]
rs4896748	1.00[YRI][hapmap]
rs9321993	0.91[JPT][hapmap]
rs9373428	0.87[JPT][hapmap]
rs9373431	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9376858	0.87[JPT][hapmap]
rs9390219	0.82[JPT][hapmap]
rs9390240	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9390242	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9399508	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9399509	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9399513	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9403603	0.82[JPT][hapmap]
rs9403610	0.87[JPT][hapmap]
rs9403616	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv886740	chr6:145105354-145199259	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145117400-145175200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr6:145137400-145176800	Weak transcription	Fetal Heart	heart
3	chr6:145137800-145175800	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr6:145141400-145175200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:145143000-145173600	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr6:145154200-145175200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr6:145154400-145173400	Strong transcription	Primary B cells from peripheral blood	blood
8	chr6:145154400-145175000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:145154400-145175200	Strong transcription	Dnd41	blood
10	chr6:145154800-145175200	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:145157400-145173400	Weak transcription	Fetal Brain Male	brain
12	chr6:145157800-145176400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:145158600-145176800	Weak transcription	Esophagus	oesophagus
14	chr6:145158800-145173600	Weak transcription	Psoas Muscle	Psoas
15	chr6:145158800-145174800	Weak transcription	Placenta	Placenta
16	chr6:145159200-145173800	Weak transcription	GM12878-XiMat	blood
17	chr6:145159200-145176600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:145159400-145177400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:145159600-145175200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr6:145161000-145174400	Weak transcription	Right Ventricle	heart
21	chr6:145161000-145176000	Weak transcription	Pancreas	Pancrea
22	chr6:145161000-145179000	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr6:145162400-145173200	Weak transcription	Colonic Mucosa	Colon
24	chr6:145162600-145173800	Weak transcription	Stomach Smooth Muscle	stomach
25	chr6:145162600-145176400	Weak transcription	Fetal Intestine Large	intestine
26	chr6:145162800-145176600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:145163800-145176200	Weak transcription	Fetal Intestine Small	intestine
28	chr6:145164200-145174800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr6:145164400-145175800	Strong transcription	Primary B cells from cord blood	blood
30	chr6:145165800-145176600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:145166000-145175400	Weak transcription	Small Intestine	intestine
32	chr6:145166200-145176400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr6:145166600-145174000	Strong transcription	Liver	Liver
34	chr6:145166600-145175000	Strong transcription	Adipose Nuclei	Adipose
35	chr6:145166600-145175200	Strong transcription	Primary T cells from cord blood	blood
36	chr6:145167200-145173400	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr6:145167200-145176800	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr6:145167400-145174800	Weak transcription	Gastric	stomach
39	chr6:145167400-145188000	Weak transcription	NHDF-Ad	bronchial
40	chr6:145167600-145174800	Weak transcription	Duodenum Mucosa	Duodenum
41	chr6:145167800-145176800	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr6:145168000-145176000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr6:145168400-145177000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr6:145168600-145172600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr6:145168600-145174800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr6:145169000-145172800	Strong transcription	Primary hematopoietic stem cells	blood
47	chr6:145169200-145177200	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr6:145169400-145173200	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr6:145169400-145189400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr6:145169600-145172600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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