Variant report

Variant	rs9403610
Chromosome Location	chr6:145122948-145122949
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145120568..145122991-chr6:145140332..145141910,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10499237	0.85[YRI][hapmap]
rs11546879	0.87[JPT][hapmap]
rs13195905	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13198393	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs13202460	0.89[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap]
rs13204600	0.81[AMR][1000 genomes]
rs13208243	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs13210728	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13215581	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs13218938	0.81[AMR][1000 genomes]
rs2297844	0.90[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs2297845	0.95[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2297846	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4131501	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs4143180	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4476850	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4631314	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321993	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9373428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9373431	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs9376855	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9376858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386082	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9386084	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9390219	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9399506	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9403600	1.00[YRI][hapmap]
rs9403603	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9403616	0.81[CHB][hapmap];0.87[JPT][hapmap];0.88[YRI][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv886740	chr6:145105354-145199259	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145066200-145126200	Weak transcription	Stomach Mucosa	stomach
2	chr6:145084000-145155800	Weak transcription	Right Ventricle	heart
3	chr6:145085800-145134800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:145089600-145138400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:145090000-145136800	Weak transcription	Fetal Heart	heart
6	chr6:145091000-145145000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:145094400-145136800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr6:145099600-145165800	Weak transcription	Small Intestine	intestine
9	chr6:145100000-145137600	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr6:145100400-145125600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:145100400-145133200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:145100400-145145000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr6:145102200-145123600	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr6:145110200-145124200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:145110400-145137000	Strong transcription	Primary B cells from cord blood	blood
16	chr6:145113600-145126400	Weak transcription	Brain Substantia Nigra	brain
17	chr6:145114200-145135600	Strong transcription	Primary B cells from peripheral blood	blood
18	chr6:145115200-145155000	Weak transcription	Esophagus	oesophagus
19	chr6:145115600-145131400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:145115600-145134800	Weak transcription	Lung	lung
21	chr6:145115800-145156600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:145116000-145125600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr6:145116000-145142000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr6:145116000-145148600	Weak transcription	Placenta	Placenta
25	chr6:145116000-145154800	Weak transcription	Spleen	Spleen
26	chr6:145116000-145155800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr6:145116200-145125600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr6:145116200-145154400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr6:145116400-145125800	Weak transcription	Fetal Muscle Leg	muscle
30	chr6:145116400-145126600	Weak transcription	Fetal Intestine Large	intestine
31	chr6:145116400-145155600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr6:145116400-145169000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr6:145117200-145128800	Strong transcription	Primary hematopoietic stem cells	blood
34	chr6:145117200-145137400	Strong transcription	Dnd41	blood
35	chr6:145117400-145175200	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr6:145117600-145124000	Strong transcription	HepG2	liver
37	chr6:145117600-145148400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr6:145118200-145137000	Weak transcription	Psoas Muscle	Psoas
39	chr6:145119000-145123800	Strong transcription	Fetal Thymus	thymus
40	chr6:145119200-145134800	Weak transcription	GM12878-XiMat	blood
41	chr6:145119200-145155800	Weak transcription	Pancreas	Pancrea
42	chr6:145119600-145128200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:145119600-145129000	Weak transcription	Colon Smooth Muscle	Colon
44	chr6:145119600-145139600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr6:145119800-145123200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr6:145119800-145125600	Weak transcription	HUVEC	blood vessel
47	chr6:145119800-145131200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr6:145119800-145133000	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr6:145120000-145123200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr6:145120000-145129600	Weak transcription	Osteobl	bone

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