Variant report

Variant	rs9373428
Chromosome Location	chr6:145147052-145147053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10499237	0.82[YRI][hapmap]
rs11546879	0.87[JPT][hapmap]
rs13195905	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13198393	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs13202460	0.89[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap]
rs13204600	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs13208243	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs13210728	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13215581	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs13218938	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2297844	0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs2297845	0.95[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2297846	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36083145	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4131501	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs4143180	0.94[ASN][1000 genomes]
rs4476850	0.91[CHB][hapmap];0.91[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4631314	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4642498	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9321993	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9373431	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs9376855	0.89[EUR][1000 genomes]
rs9376858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9386082	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9386084	0.96[ASN][1000 genomes]
rs9390219	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9399506	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9403600	1.00[YRI][hapmap]
rs9403603	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9403616	0.82[CHB][hapmap];0.87[JPT][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv886740	chr6:145105354-145199259	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv886741	chr6:145123326-145165362	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145084000-145155800	Weak transcription	Right Ventricle	heart
2	chr6:145099600-145165800	Weak transcription	Small Intestine	intestine
3	chr6:145115200-145155000	Weak transcription	Esophagus	oesophagus
4	chr6:145115800-145156600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:145116000-145148600	Weak transcription	Placenta	Placenta
6	chr6:145116000-145154800	Weak transcription	Spleen	Spleen
7	chr6:145116000-145155800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:145116200-145154400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:145116400-145155600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr6:145116400-145169000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:145117400-145175200	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr6:145117600-145148400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:145119200-145155800	Weak transcription	Pancreas	Pancrea
14	chr6:145120000-145148800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:145120000-145155000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:145120200-145148400	Weak transcription	Ovary	ovary
17	chr6:145120200-145156400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr6:145120600-145148200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:145120600-145148400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr6:145120600-145148800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:145120600-145154800	Weak transcription	Aorta	Aorta
22	chr6:145120800-145148400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr6:145120800-145155800	Weak transcription	Thymus	Thymus
24	chr6:145126000-145148200	Weak transcription	HUVEC	blood vessel
25	chr6:145126600-145169400	Weak transcription	Stomach Mucosa	stomach
26	chr6:145127000-145147800	Weak transcription	Fetal Muscle Trunk	muscle
27	chr6:145127000-145148600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr6:145127600-145148400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:145130600-145163800	Weak transcription	NHEK	skin
30	chr6:145130800-145147400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:145130800-145156800	Weak transcription	Osteobl	bone
32	chr6:145130800-145172200	Weak transcription	NH-A	brain
33	chr6:145131000-145148600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:145131000-145156600	Weak transcription	NHLF	lung
35	chr6:145131000-145157000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:145132400-145147800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr6:145132800-145155600	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr6:145135200-145149000	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr6:145135400-145148200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:145135400-145148200	Weak transcription	Fetal Intestine Large	intestine
41	chr6:145135400-145152000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr6:145135400-145166000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr6:145135600-145147800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr6:145135600-145155800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr6:145135600-145156800	Weak transcription	Lung	lung
46	chr6:145135600-145157600	Weak transcription	GM12878-XiMat	blood
47	chr6:145136200-145147800	Weak transcription	Fetal Lung	lung
48	chr6:145137000-145148400	Weak transcription	Fetal Muscle Leg	muscle
49	chr6:145137200-145148000	Weak transcription	Adipose Nuclei	Adipose
50	chr6:145137400-145148200	Weak transcription	Liver	Liver

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