Variant report

Variant	rs9390262
Chromosome Location	chr6:145246425-145246426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11759712	0.85[ASN][1000 genomes]
rs12176281	0.89[ASN][1000 genomes]
rs17074560	0.82[ASN][1000 genomes]
rs59145887	1.00[ASN][1000 genomes]
rs9373435	1.00[ASN][1000 genomes]
rs9386091	1.00[ASN][1000 genomes]
rs9386092	0.83[ASN][1000 genomes]
rs9390255	1.00[ASN][1000 genomes]
rs9390256	0.95[ASN][1000 genomes]
rs9390260	1.00[ASN][1000 genomes]
rs9399522	0.83[ASN][1000 genomes]
rs9403635	1.00[ASN][1000 genomes]
rs9497116	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145244600-145246800	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr6:145246000-145246600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:145246000-145246800	Enhancers	Adipose Nuclei	Adipose
4	chr6:145246200-145246800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links