Variant report
| Variant | rs9497116 |
|---|---|
| Chromosome Location | chr6:145212403-145212404 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:145210923..145212956-chr6:145216545..145218194,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11759712 | 0.81[ASN][1000 genomes] |
| rs12176281 | 0.94[ASN][1000 genomes] |
| rs59145887 | 0.95[ASN][1000 genomes] |
| rs6923958 | 1.00[AMR][1000 genomes] |
| rs6928429 | 1.00[AMR][1000 genomes] |
| rs6932670 | 1.00[AMR][1000 genomes] |
| rs9373435 | 0.95[ASN][1000 genomes] |
| rs9386091 | 0.95[ASN][1000 genomes] |
| rs9390255 | 0.95[ASN][1000 genomes] |
| rs9390256 | 0.91[ASN][1000 genomes] |
| rs9390260 | 0.95[ASN][1000 genomes] |
| rs9390262 | 0.95[ASN][1000 genomes] |
| rs9403623 | 0.84[ASN][1000 genomes] |
| rs9403635 | 0.95[ASN][1000 genomes] |
| rs9484922 | 1.00[AMR][1000 genomes] |
| rs9484923 | 1.00[AMR][1000 genomes] |
| rs9497115 | 1.00[AMR][1000 genomes] |
| rs9497122 | 1.00[AMR][1000 genomes] |
| rs9497124 | 1.00[AMR][1000 genomes] |
| rs9497126 | 1.00[AMR][1000 genomes] |
| rs9497127 | 1.00[AMR][1000 genomes] |
| rs9497130 | 1.00[AMR][1000 genomes] |
| rs9497148 | 1.00[AMR][1000 genomes] |
| rs9986575 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016747 | chr6:144917411-145599874 | Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv464070 | chr6:145184504-145214952 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv604823 | chr6:145184504-145214952 | Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv1850377 | chr6:145199259-145319640 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:145210600-145217000 | Weak transcription | Right Atrium | heart |
