Variant report
| Variant | rs9497115 |
|---|---|
| Chromosome Location | chr6:145209861-145209862 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:145202232..145204712-chr6:145207955..145210367,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs6923958 | 1.00[AMR][1000 genomes] |
| rs6928429 | 1.00[AMR][1000 genomes] |
| rs6932670 | 1.00[AMR][1000 genomes] |
| rs9484922 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9484923 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9497116 | 1.00[AMR][1000 genomes] |
| rs9497122 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9497124 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9497126 | 1.00[AMR][1000 genomes] |
| rs9497127 | 1.00[AMR][1000 genomes] |
| rs9497130 | 1.00[AMR][1000 genomes] |
| rs9497148 | 1.00[AMR][1000 genomes] |
| rs9986575 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016747 | chr6:144917411-145599874 | Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv464070 | chr6:145184504-145214952 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv604823 | chr6:145184504-145214952 | Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv1850377 | chr6:145199259-145319640 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:145209800-145210200 | Enhancers | HSMM | muscle |
