Variant report

Variant	rs9497130
Chromosome Location	chr6:145239652-145239653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs6923958	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6928429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6932670	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484922	1.00[AMR][1000 genomes]
rs9484923	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497115	1.00[AMR][1000 genomes]
rs9497116	1.00[AMR][1000 genomes]
rs9497122	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497124	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497126	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497148	1.00[AMR][1000 genomes]
rs9654647	0.90[AFR][1000 genomes]
rs9986575	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145234400-145243400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:145234800-145242000	Weak transcription	HSMMtube	muscle
3	chr6:145235600-145241600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:145239400-145242000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:145239600-145240000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:145239600-145240400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:145239600-145240400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:145239600-145241400	Weak transcription	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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