Variant report

Variant	rs9497126
Chromosome Location	chr6:145229730-145229731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs6923958	1.00[AMR][1000 genomes]
rs6928429	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6932670	1.00[AMR][1000 genomes]
rs9484922	1.00[AMR][1000 genomes]
rs9484923	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497115	1.00[AMR][1000 genomes]
rs9497116	1.00[AMR][1000 genomes]
rs9497122	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497124	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497127	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497130	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497148	1.00[AMR][1000 genomes]
rs9654647	0.85[AFR][1000 genomes]
rs9986575	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3437466	chr6:145226059-145230557	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145228000-145235600	Weak transcription	Right Atrium	heart
2	chr6:145229000-145230400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:145229200-145230000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:145229200-145230400	Enhancers	Adipose Nuclei	Adipose
5	chr6:145229400-145230200	Enhancers	Colon Smooth Muscle	Colon
6	chr6:145229400-145231800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:145229600-145230000	Enhancers	Rectal Smooth Muscle	rectum
8	chr6:145229600-145230000	Enhancers	Stomach Smooth Muscle	stomach
9	chr6:145229600-145230000	Enhancers	NHLF	lung
10	chr6:145229600-145232400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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