Variant report

Variant	rs9497122
Chromosome Location	chr6:145220595-145220596
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs6923958	1.00[AMR][1000 genomes]
rs6928429	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6932670	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484922	1.00[AMR][1000 genomes]
rs9484923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497074	1.00[ASW][hapmap]
rs9497078	1.00[ASW][hapmap]
rs9497098	1.00[ASW][hapmap]
rs9497115	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497116	1.00[AMR][1000 genomes]
rs9497124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497126	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497127	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497130	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497148	1.00[AMR][1000 genomes]
rs9654647	0.80[AFR][1000 genomes]
rs9986575	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145215400-145220800	Enhancers	Osteobl	bone
2	chr6:145216400-145221200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:145216800-145222400	Enhancers	NHDF-Ad	bronchial
4	chr6:145217200-145220600	Enhancers	NHLF	lung
5	chr6:145217600-145220600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:145217600-145221400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:145218200-145220600	Enhancers	HMEC	breast
8	chr6:145219200-145222200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:145219200-145222600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:145219400-145222400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:145220000-145221000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:145220200-145222600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:145220400-145222200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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