Variant report

Variant	rs9390435
Chromosome Location	chr6:147190799-147190800
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1467623	0.83[JPT][hapmap]
rs1998641	0.88[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap]
rs4895704	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs724774	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs877660	0.83[JPT][hapmap]
rs912577	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs912580	0.83[JPT][hapmap]
rs9377035	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9399589	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9399590	0.88[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs9403825	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9403828	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147179600-147192200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:147182200-147197600	Weak transcription	Pancreas	Pancrea
3	chr6:147182800-147193000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:147185400-147192000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:147185800-147191200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:147186000-147191400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:147186200-147191600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:147186400-147192800	Weak transcription	Esophagus	oesophagus
9	chr6:147189800-147196400	Enhancers	K562	blood
10	chr6:147190200-147192800	Weak transcription	HepG2	liver
11	chr6:147190400-147193000	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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