Variant report

Variant	rs877660
Chromosome Location	chr6:147203019-147203020
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1022877	0.82[ASW][hapmap];1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs1122570	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs1324684	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1467623	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1966195	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1998641	0.83[JPT][hapmap]
rs4605907	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4895704	0.88[JPT][hapmap]
rs4896895	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724774	0.83[JPT][hapmap]
rs7752595	0.85[YRI][hapmap]
rs912577	0.88[JPT][hapmap]
rs912580	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs912581	0.82[ASN][1000 genomes]
rs9373515	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390434	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9390436	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147198200-147203600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:147198200-147205600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:147200000-147205600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:147200200-147204800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:147200200-147205000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:147200200-147205400	Weak transcription	Liver	Liver
7	chr6:147200200-147208600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr6:147200400-147204800	Weak transcription	Fetal Intestine Small	intestine
9	chr6:147200400-147205000	Weak transcription	Fetal Intestine Large	intestine
10	chr6:147200800-147203200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:147200800-147205000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:147201200-147208000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr6:147201400-147205000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr6:147202000-147203200	Flanking Active TSS	K562	blood
15	chr6:147202200-147203200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr6:147202200-147203200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr6:147202200-147212400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr6:147202800-147205000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr6:147203000-147203200	Enhancers	Small Intestine	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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