Variant report

Variant	rs9373515
Chromosome Location	chr6:147194044-147194045
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1122570	0.82[ASN][1000 genomes]
rs1324684	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1467623	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1966195	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4605907	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4896895	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs877660	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs912580	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs912581	0.82[ASN][1000 genomes]
rs9390434	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9390436	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147182200-147197600	Weak transcription	Pancreas	Pancrea
2	chr6:147189800-147196400	Enhancers	K562	blood
3	chr6:147192400-147195800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:147192400-147196600	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:147192400-147197000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:147192400-147197400	Weak transcription	Primary B cells from peripheral blood	blood
7	chr6:147192600-147196000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:147192600-147196800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:147193000-147200800	Weak transcription	Esophagus	oesophagus
10	chr6:147193400-147195600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:147193400-147195800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:147193400-147198600	Weak transcription	Liver	Liver
13	chr6:147193600-147197600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:147193600-147199600	Weak transcription	NHDF-Ad	bronchial
15	chr6:147194000-147197000	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links