Variant report

Variant	rs9390436
Chromosome Location	chr6:147206913-147206914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147204253..147217184-chr6:147521370..147537831,35	K562	blood:
2	chr6:147206177..147208553-chr6:147483473..147485065,2	K562	blood:
3	chr6:147205157..147208020-chr6:147323168..147325113,2	K562	blood:
4	chr6:147205707..147208071-chr6:147446110..147448975,2	K562	blood:
5	chr6:147205783..147208504-chr6:147543534..147546293,2	K562	blood:
6	chr6:147200700..147210109-chr6:147522792..147529002,17	K562	blood:
7	chr6:147206608..147209541-chr6:147294040..147296917,2	K562	blood:
8	chr6:147206418..147208548-chr6:147443169..147444927,2	K562	blood:
9	chr6:147205531..147207061-chr6:147703036..147705763,2	K562	blood:
10	chr6:147205396..147207427-chr6:147257781..147260331,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SHPRH-6	chr6:147206001-147207541	l_3289_chr6:147204158-147214165_brain

No data

No data

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1022877	0.92[CEU][hapmap]
rs1122570	0.82[ASN][1000 genomes]
rs1324684	0.92[CEU][hapmap];0.83[CHB][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1467623	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1966195	0.93[CEU][hapmap];0.84[CHB][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4605907	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4896895	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752595	0.86[YRI][hapmap]
rs877660	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs912580	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs912581	0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs9373515	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390434	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147200200-147208600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:147201200-147208000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr6:147202200-147212400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:147203200-147212000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:147204800-147207400	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr6:147205000-147207600	Enhancers	Fetal Intestine Large	intestine
7	chr6:147205200-147208400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:147205400-147207200	Enhancers	Liver	Liver
9	chr6:147205400-147208400	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr6:147205600-147207600	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr6:147206000-147207000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:147206600-147207000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:147206600-147207600	Enhancers	Fetal Intestine Small	intestine
14	chr6:147206600-147207600	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr6:147206800-147207600	Flanking Active TSS	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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