Variant report

Variant	rs4605907
Chromosome Location	chr6:147196871-147196872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1324684	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1467623	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1966195	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4896895	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs877660	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs912580	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9373515	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9390434	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9390436	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147182200-147197600	Weak transcription	Pancreas	Pancrea
2	chr6:147192400-147197000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr6:147192400-147197400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr6:147193000-147200800	Weak transcription	Esophagus	oesophagus
5	chr6:147193400-147198600	Weak transcription	Liver	Liver
6	chr6:147193600-147197600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:147193600-147199600	Weak transcription	NHDF-Ad	bronchial
8	chr6:147194000-147197000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:147195600-147197400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:147196400-147197200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:147196600-147197400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr6:147196800-147197000	Active TSS	K562	blood
13	chr6:147196800-147197600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr6:147196800-147199000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:147196800-147200800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr6:147196800-147202200	Enhancers	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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