Variant report

Variant	rs9390444
Chromosome Location	chr6:147271044-147271045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1540884	1.00[AMR][1000 genomes]
rs17076483	0.85[ASN][1000 genomes]
rs17076614	1.00[AMR][1000 genomes]
rs62434856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62435583	1.00[AMR][1000 genomes]
rs62435585	1.00[AMR][1000 genomes]
rs9373517	0.87[ASN][1000 genomes]
rs9377037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9390446	0.87[ASN][1000 genomes]
rs9403833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403839	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv1846046	chr6:147258908-147271295	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147265600-147276600	Weak transcription	Pancreas	Pancrea
2	chr6:147267400-147271600	Weak transcription	Small Intestine	intestine
3	chr6:147268800-147277800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:147270400-147271200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:147270400-147271600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:147270400-147272600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:147270800-147271600	Enhancers	Primary T cells from cord blood	blood
8	chr6:147270800-147272200	Enhancers	K562	blood
9	chr6:147271000-147271600	Enhancers	HepG2	liver
10	chr6:147271000-147272400	Enhancers	Fetal Intestine Small	intestine
11	chr6:147271000-147272600	Enhancers	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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