Variant report

Variant	rs9392088
Chromosome Location	chr6:5708056-5708057
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13191290	0.88[ASN][1000 genomes]
rs13191825	0.88[ASN][1000 genomes]
rs13207857	0.88[ASN][1000 genomes]
rs13210203	0.88[ASN][1000 genomes]
rs13210673	0.87[ASN][1000 genomes]
rs13210778	0.88[ASN][1000 genomes]
rs6939091	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7756967	0.90[ASN][1000 genomes]
rs7768893	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9378439	0.81[EUR][1000 genomes]
rs9378983	0.81[EUR][1000 genomes]
rs9405863	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9405864	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761060	chr6:5705542-5710228	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5673800-5709800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:5678000-5709400	Weak transcription	Pancreas	Pancrea
3	chr6:5695800-5709800	Weak transcription	Fetal Stomach	stomach
4	chr6:5696200-5712400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:5699400-5713200	Weak transcription	Esophagus	oesophagus
6	chr6:5699800-5715800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:5700400-5708200	Weak transcription	Primary B cells from cord blood	blood
8	chr6:5701800-5708600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:5702400-5709400	Weak transcription	Fetal Lung	lung
10	chr6:5704200-5712600	Weak transcription	Lung	lung
11	chr6:5704400-5709400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:5705000-5716600	Weak transcription	Fetal Intestine Small	intestine
13	chr6:5706000-5712200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:5706200-5712600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:5706600-5716600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:5707000-5708200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr6:5707000-5710200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr6:5707000-5712600	Weak transcription	Aorta	Aorta
19	chr6:5707000-5714400	Enhancers	Fetal Thymus	thymus
20	chr6:5707600-5724000	Weak transcription	Thymus	Thymus
21	chr6:5708000-5708200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:5708000-5711600	Weak transcription	Primary T cells from cord blood	blood

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