Variant report

Variant	rs13210673
Chromosome Location	chr6:5710134-5710135
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11757961	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.99[EUR][1000 genomes]
rs13191165	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13191290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13191825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13201770	0.84[CEU][hapmap];0.83[CHB][hapmap];0.81[EUR][1000 genomes]
rs13207857	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13210203	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13210778	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1977058	0.90[EUR][1000 genomes]
rs7740727	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs7756967	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7761674	0.96[CEU][hapmap]
rs7763308	0.93[EUR][1000 genomes]
rs7768893	0.87[ASN][1000 genomes]
rs9392088	0.87[ASN][1000 genomes]
rs9405863	0.91[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs9405864	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761060	chr6:5705542-5710228	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv523206	chr6:5708306-5710257	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5696200-5712400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:5699400-5713200	Weak transcription	Esophagus	oesophagus
3	chr6:5699800-5715800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:5704200-5712600	Weak transcription	Lung	lung
5	chr6:5705000-5716600	Weak transcription	Fetal Intestine Small	intestine
6	chr6:5706000-5712200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:5706200-5712600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:5706600-5716600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:5707000-5710200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:5707000-5712600	Weak transcription	Aorta	Aorta
11	chr6:5707000-5714400	Enhancers	Fetal Thymus	thymus
12	chr6:5707600-5724000	Weak transcription	Thymus	Thymus
13	chr6:5708000-5711600	Weak transcription	Primary T cells from cord blood	blood
14	chr6:5709000-5710800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr6:5709000-5712400	Weak transcription	Primary B cells from cord blood	blood
16	chr6:5709400-5710600	Enhancers	Fetal Lung	lung
17	chr6:5709600-5710200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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