Variant report

Variant	rs11757961
Chromosome Location	chr6:5708735-5708736
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:5704009..5705520-chr6:5708074..5709705,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13191165	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13191290	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13191825	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13201770	0.84[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13207857	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13210203	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13210673	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.99[EUR][1000 genomes]
rs13210778	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1977058	0.81[CHB][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6939091	0.86[ASN][1000 genomes]
rs7740727	1.00[CEU][hapmap];0.81[CHB][hapmap];0.98[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap]
rs7756967	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[GIH][hapmap];0.95[TSI][hapmap];0.98[EUR][1000 genomes]
rs7761674	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7763308	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9405864	0.88[CEU][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761060	chr6:5705542-5710228	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv523206	chr6:5708306-5710257	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5673800-5709800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:5678000-5709400	Weak transcription	Pancreas	Pancrea
3	chr6:5695800-5709800	Weak transcription	Fetal Stomach	stomach
4	chr6:5696200-5712400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:5699400-5713200	Weak transcription	Esophagus	oesophagus
6	chr6:5699800-5715800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:5702400-5709400	Weak transcription	Fetal Lung	lung
8	chr6:5704200-5712600	Weak transcription	Lung	lung
9	chr6:5704400-5709400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:5705000-5716600	Weak transcription	Fetal Intestine Small	intestine
11	chr6:5706000-5712200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:5706200-5712600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:5706600-5716600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:5707000-5710200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr6:5707000-5712600	Weak transcription	Aorta	Aorta
16	chr6:5707000-5714400	Enhancers	Fetal Thymus	thymus
17	chr6:5707600-5724000	Weak transcription	Thymus	Thymus
18	chr6:5708000-5711600	Weak transcription	Primary T cells from cord blood	blood
19	chr6:5708200-5709000	Strong transcription	Primary B cells from cord blood	blood
20	chr6:5708600-5709000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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