Variant report

Variant	rs1977058
Chromosome Location	chr6:5712081-5712082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11757961	0.81[CHB][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13191165	0.80[ASW][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13191290	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13191825	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13201770	0.83[JPT][hapmap];0.80[AMR][1000 genomes]
rs13207857	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13210203	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13210673	0.90[EUR][1000 genomes]
rs13210778	0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs7740727	0.87[MEX][hapmap];0.93[TSI][hapmap]
rs7756967	0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs7761674	0.81[AMR][1000 genomes]
rs7763308	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5696200-5712400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:5699400-5713200	Weak transcription	Esophagus	oesophagus
3	chr6:5699800-5715800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:5704200-5712600	Weak transcription	Lung	lung
5	chr6:5705000-5716600	Weak transcription	Fetal Intestine Small	intestine
6	chr6:5706000-5712200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:5706200-5712600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:5706600-5716600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:5707000-5712600	Weak transcription	Aorta	Aorta
10	chr6:5707000-5714400	Enhancers	Fetal Thymus	thymus
11	chr6:5707600-5724000	Weak transcription	Thymus	Thymus
12	chr6:5709000-5712400	Weak transcription	Primary B cells from cord blood	blood
13	chr6:5710600-5717000	Weak transcription	Fetal Lung	lung
14	chr6:5711000-5712800	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:5711000-5714000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:5711600-5712600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:5711600-5712600	Enhancers	Primary T cells from cord blood	blood
18	chr6:5712000-5714800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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