Variant report

Variant	rs9393526
Chromosome Location	chr6:24072458-24072459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11756314	0.98[ASN][1000 genomes]
rs12175687	0.92[ASN][1000 genomes]
rs3846826	0.87[ASN][1000 genomes]
rs55691906	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9348627	0.98[ASN][1000 genomes]
rs9348628	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9348630	0.98[ASN][1000 genomes]
rs9348631	0.98[ASN][1000 genomes]
rs9358747	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9366559	0.90[ASN][1000 genomes]
rs9379634	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9379635	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9379636	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9379637	0.93[ASN][1000 genomes]
rs9393521	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9393522	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9393523	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9393525	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv883479	chr6:23804221-24090497	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv462660	chr6:24052526-24080370	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv601145	chr6:24052526-24080370	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24068000-24072600	Enhancers	Brain Germinal Matrix	brain
2	chr6:24070200-24078200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:24072200-24072800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:24072400-24072800	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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