Variant report

Variant	rs9393568
Chromosome Location	chr6:24629612-24629613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24627114..24630074-chr6:24633308..24635849,2	K562	blood:
2	chr6:24624408..24625994-chr6:24628936..24631566,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1555090	0.80[EUR][1000 genomes]
rs1883592	0.80[EUR][1000 genomes]
rs1883594	0.80[EUR][1000 genomes]
rs2038135	0.81[EUR][1000 genomes]
rs2038138	0.81[EUR][1000 genomes]
rs2038139	0.81[EUR][1000 genomes]
rs2143341	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2143342	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2179515	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2206525	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2223590	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2235677	0.81[EUR][1000 genomes]
rs2328846	0.81[EUR][1000 genomes]
rs4712835	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6456622	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6903205	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6903738	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6906247	0.86[EUR][1000 genomes]
rs6917660	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6923143	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6923652	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6923845	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6923867	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6935753	0.80[EUR][1000 genomes]
rs6938069	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6938411	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs761101	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7751357	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7755563	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7755983	0.87[EUR][1000 genomes]
rs7759747	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7760198	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9356940	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9356941	0.84[EUR][1000 genomes]
rs9358777	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9358778	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9358780	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9358783	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9358784	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9366573	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9366574	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9366575	0.84[EUR][1000 genomes]
rs9366576	0.84[EUR][1000 genomes]
rs9379676	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9393569	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9393570	0.88[EUR][1000 genomes]
rs9393571	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9461044	0.81[EUR][1000 genomes]
rs9467245	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020653	chr6:24557870-24638244	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	esv3508002	chr6:24618580-24732946	Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	esv3508003	chr6:24618580-24732946	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv601164	chr6:24625091-24661599	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24621600-24631400	Weak transcription	Fetal Brain Male	brain
2	chr6:24623400-24631400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:24629200-24631000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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