Variant report

Variant	rs9394549
Chromosome Location	chr6:38852819-38852820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38851556..38854549-chr6:38855510..38859290,4	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1018437	0.84[CEU][hapmap]
rs1564377	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1564378	0.86[CHB][hapmap]
rs1678694	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1678698	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1678699	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1678703	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1678708	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1678709	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1678717	0.83[CEU][hapmap]
rs1678742	0.87[CEU][hapmap]
rs1738203	0.84[CEU][hapmap]
rs1738211	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1738215	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1738216	0.84[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1738219	0.83[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2061907	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2179711	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2179712	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2179713	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2395709	0.92[CEU][hapmap];0.92[YRI][hapmap]
rs34625234	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35696175	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4302660	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4380739	0.87[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4386804	0.88[CEU][hapmap];0.93[YRI][hapmap]
rs4391252	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs4443498	0.88[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4501424	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4571559	0.88[CEU][hapmap];0.93[YRI][hapmap]
rs4590258	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs4711558	0.87[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4711559	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4714193	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs62396413	0.86[EUR][1000 genomes]
rs6458073	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6458074	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6458075	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6458076	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6458077	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6458078	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6458079	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6458080	0.87[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6458081	0.88[CEU][hapmap];0.90[YRI][hapmap]
rs6928952	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6931736	0.88[CEU][hapmap];0.93[YRI][hapmap]
rs6934064	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7746153	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7748684	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7757460	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7772148	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs874808	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs9296265	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs9349100	0.81[EUR][1000 genomes]
rs9357290	0.86[CEU][hapmap];1.00[YRI][hapmap]
rs9366982	0.88[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9369085	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9369087	0.81[EUR][1000 genomes]
rs9369088	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs9369089	0.87[CEU][hapmap];0.93[YRI][hapmap]
rs9380789	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs9380791	0.87[CEU][hapmap];0.89[YRI][hapmap]
rs9380792	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs9380795	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9380796	0.88[CEU][hapmap];0.93[YRI][hapmap]
rs9380798	0.88[CEU][hapmap];0.93[YRI][hapmap]
rs9380799	0.88[CEU][hapmap];0.93[YRI][hapmap]
rs9380804	0.85[CHB][hapmap]
rs9394545	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9394547	0.95[CEU][hapmap];0.93[YRI][hapmap]
rs9394550	0.87[CEU][hapmap];0.82[YRI][hapmap]
rs984523	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs984525	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830643	chr6:38726675-38905589	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv885821	chr6:38843970-39039503	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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