Variant report

Variant	rs9398059
Chromosome Location	chr6:106514039-106514040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:106511817..106514767-chr6:106525243..106527594,2	K562	blood:
2	chr6:106511935..106514497-chr6:106518179..106520674,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12663005	0.85[AMR][1000 genomes]
rs17558727	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17558797	0.85[AMR][1000 genomes]
rs3890556	0.85[AMR][1000 genomes]
rs4336479	0.98[ASN][1000 genomes]
rs4443535	0.98[ASN][1000 genomes]
rs6913893	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9320148	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs9373830	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9384600	0.85[AMR][1000 genomes]
rs9386511	0.85[AMR][1000 genomes]
rs9398063	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9398065	0.85[AMR][1000 genomes]
rs9398066	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932155	chr6:106281728-107030467	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1025231	chr6:106451012-106634389	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv830755	chr6:106461705-106624202	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106510000-106516400	Strong transcription	Fetal Intestine Large	intestine
2	chr6:106512000-106514400	Strong transcription	Fetal Intestine Small	intestine
3	chr6:106512200-106517400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:106512400-106515200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:106512600-106514400	Weak transcription	Pancreas	Pancrea
6	chr6:106512600-106514800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:106512600-106517200	Weak transcription	HMEC	breast
8	chr6:106512600-106517200	Weak transcription	NH-A	brain
9	chr6:106512600-106517400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:106512800-106514800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:106512800-106517400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:106512800-106517400	Weak transcription	HSMM	muscle
13	chr6:106512800-106517400	Weak transcription	NHEK	skin
14	chr6:106513000-106514800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:106513000-106514800	Weak transcription	NHDF-Ad	bronchial
16	chr6:106513000-106514800	Weak transcription	Osteobl	bone
17	chr6:106513000-106516800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:106513000-106517400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:106513000-106517400	Weak transcription	NHLF	lung
20	chr6:106513000-106517600	Weak transcription	HSMMtube	muscle
21	chr6:106513200-106514800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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