Variant report

Variant	rs9398063
Chromosome Location	chr6:106528340-106528341
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:106524677..106527761-chr6:106528087..106531603,5	K562	blood:
2	chr6:106527446..106530103-chr6:106534168..106535820,2	K562	blood:

Variant related genes	Relation type
ENSG00000057657	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12663005	1.00[AMR][1000 genomes]
rs17558727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17558797	1.00[AMR][1000 genomes]
rs3890556	1.00[AMR][1000 genomes]
rs4336479	0.94[ASN][1000 genomes]
rs4443535	0.94[ASN][1000 genomes]
rs6913893	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9320148	0.98[ASN][1000 genomes]
rs9373830	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9384600	1.00[AMR][1000 genomes]
rs9386511	1.00[AMR][1000 genomes]
rs9398059	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9398065	1.00[AMR][1000 genomes]
rs9398066	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932155	chr6:106281728-107030467	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1025231	chr6:106451012-106634389	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv830755	chr6:106461705-106624202	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106518000-106530000	Weak transcription	NHEK	skin
2	chr6:106518600-106530400	Strong transcription	Fetal Intestine Small	intestine
3	chr6:106525400-106530400	Weak transcription	NH-A	brain
4	chr6:106525400-106530600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:106525600-106529200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:106525600-106530600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:106525600-106530800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:106525800-106528400	Strong transcription	Fetal Intestine Large	intestine
9	chr6:106526000-106529600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:106526000-106529800	Weak transcription	NHDF-Ad	bronchial
11	chr6:106526000-106530600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:106526200-106529800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:106526200-106529800	Weak transcription	NHLF	lung
14	chr6:106526400-106530800	Weak transcription	A549	lung
15	chr6:106526600-106529800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:106527600-106530000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:106527800-106528400	Enhancers	Brain Germinal Matrix	brain
18	chr6:106527800-106528600	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr6:106527800-106528800	Bivalent Enhancer	Fetal Heart	heart
20	chr6:106528000-106528600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:106528000-106528800	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr6:106528000-106528800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:106528000-106529000	Enhancers	H1 Cell Line	embryonic stem cell
24	chr6:106528000-106529000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
25	chr6:106528000-106529200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:106528200-106528400	Bivalent Enhancer	Fetal Brain Male	brain
27	chr6:106528200-106529000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:106528200-106529000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:106528200-106532200	Weak transcription	H9 Cell Line	embryonic stem cell

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