Variant report

Variant	rs9398100
Chromosome Location	chr6:107123510-107123511
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs710096	0.86[CHB][hapmap]
rs936497	0.88[CHB][hapmap]
rs9386577	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9386578	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9400046	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107078600-107125200	Weak transcription	Stomach Mucosa	stomach
2	chr6:107106600-107126200	Weak transcription	Psoas Muscle	Psoas
3	chr6:107112800-107124200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:107114000-107125400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:107116600-107124200	Weak transcription	Primary T cells from cord blood	blood
6	chr6:107116800-107124800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr6:107116800-107125000	Weak transcription	Primary B cells from cord blood	blood
8	chr6:107117600-107130800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:107121000-107125200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:107121000-107125200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:107121200-107125400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:107122800-107123600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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