Variant report

Variant	rs9398479
Chromosome Location	chr6:118362778-118362779
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs4395763	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4501453	1.00[AMR][1000 genomes]
rs56731936	1.00[AMR][1000 genomes]
rs6928405	0.83[AMR][1000 genomes]
rs6942225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7741221	1.00[AMR][1000 genomes]
rs7741322	1.00[AMR][1000 genomes]
rs7757378	1.00[AMR][1000 genomes]
rs9398481	1.00[AMR][1000 genomes]
rs9401054	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118353200-118365000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:118355200-118364800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:118361400-118364800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:118361800-118364400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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