Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11751321	1.00[ASN][1000 genomes]
rs11751360	1.00[ASN][1000 genomes]
rs4395763	0.83[AMR][1000 genomes]
rs4501453	0.83[AMR][1000 genomes]
rs4538743	1.00[ASN][1000 genomes]
rs55884001	1.00[ASN][1000 genomes]
rs56225793	1.00[ASN][1000 genomes]
rs56731936	0.83[AMR][1000 genomes]
rs60541620	1.00[ASN][1000 genomes]
rs6942225	0.83[AMR][1000 genomes]
rs72959841	1.00[ASN][1000 genomes]
rs72959843	1.00[ASN][1000 genomes]
rs72959856	1.00[ASN][1000 genomes]
rs7741115	1.00[ASN][1000 genomes]
rs7741221	0.83[AMR][1000 genomes]
rs7741322	0.83[AMR][1000 genomes]
rs7748638	1.00[ASN][1000 genomes]
rs7757378	0.83[AMR][1000 genomes]
rs9398479	0.83[AMR][1000 genomes]
rs9398481	0.86[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9401054	0.83[AMR][1000 genomes]
rs9481763	1.00[ASN][1000 genomes]
rs9481764	1.00[ASN][1000 genomes]
rs9481765	1.00[ASN][1000 genomes]
rs9489296	1.00[ASN][1000 genomes]
rs9489297	1.00[ASN][1000 genomes]
rs9489300	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118377200-118408600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:118386600-118409600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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