Variant report

Variant	rs9489297
Chromosome Location	chr6:118343461-118343462
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11751321	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751360	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4538743	1.00[CEU][hapmap];0.94[GIH][hapmap];0.96[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55884001	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56225793	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60541620	1.00[ASN][1000 genomes]
rs6928405	1.00[ASN][1000 genomes]
rs72959841	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72959843	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72959856	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741115	1.00[CEU][hapmap];0.94[GIH][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748638	1.00[ASN][1000 genomes]
rs9481763	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9481764	1.00[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9481765	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9489296	0.88[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9489300	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9489297	SLC35F1	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118338800-118344400	Weak transcription	Fetal Brain Female	brain
2	chr6:118338800-118352400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:118339000-118347200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:118343400-118354800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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