Variant report
| Variant | rs60541620 |
|---|---|
| Chromosome Location | chr6:118342937-118342938 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:118334788..118337364-chr6:118342018..118344547,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs11751321 | 1.00[ASN][1000 genomes] |
| rs11751360 | 1.00[ASN][1000 genomes] |
| rs12110607 | 1.00[EUR][1000 genomes] |
| rs4132663 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4276535 | 1.00[EUR][1000 genomes] |
| rs4307205 | 1.00[EUR][1000 genomes] |
| rs4538743 | 1.00[ASN][1000 genomes] |
| rs4587199 | 1.00[EUR][1000 genomes] |
| rs5003341 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55752923 | 1.00[EUR][1000 genomes] |
| rs55884001 | 1.00[ASN][1000 genomes] |
| rs56225793 | 1.00[ASN][1000 genomes] |
| rs56993874 | 1.00[EUR][1000 genomes] |
| rs58861108 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61019727 | 1.00[EUR][1000 genomes] |
| rs6568998 | 1.00[EUR][1000 genomes] |
| rs6901514 | 1.00[EUR][1000 genomes] |
| rs6928405 | 1.00[ASN][1000 genomes] |
| rs6935478 | 1.00[EUR][1000 genomes] |
| rs72959841 | 1.00[ASN][1000 genomes] |
| rs72959843 | 1.00[ASN][1000 genomes] |
| rs72959856 | 1.00[ASN][1000 genomes] |
| rs73521541 | 1.00[EUR][1000 genomes] |
| rs73525652 | 1.00[EUR][1000 genomes] |
| rs73766425 | 1.00[EUR][1000 genomes] |
| rs73768145 | 1.00[EUR][1000 genomes] |
| rs7741115 | 1.00[ASN][1000 genomes] |
| rs7748638 | 1.00[ASN][1000 genomes] |
| rs7775102 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7775110 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9385033 | 1.00[EUR][1000 genomes] |
| rs9385034 | 1.00[EUR][1000 genomes] |
| rs9387541 | 1.00[EUR][1000 genomes] |
| rs9481763 | 1.00[ASN][1000 genomes] |
| rs9481764 | 1.00[ASN][1000 genomes] |
| rs9481765 | 1.00[ASN][1000 genomes] |
| rs9489296 | 1.00[ASN][1000 genomes] |
| rs9489297 | 1.00[ASN][1000 genomes] |
| rs9489300 | 1.00[ASN][1000 genomes] |
| rs9489309 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530526 | chr6:118027339-118718476 | Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:118338800-118344400 | Weak transcription | Fetal Brain Female | brain |
| 2 | chr6:118338800-118352400 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
| 3 | chr6:118339000-118347200 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
