Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:118415452..118418143-chr6:118419953..118422521,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12110607	1.00[EUR][1000 genomes]
rs17079812	1.00[MEX][hapmap]
rs2484147	1.00[MEX][hapmap]
rs4132663	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4276535	0.81[ASW][hapmap];0.82[MKK][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4307205	1.00[EUR][1000 genomes]
rs4412242	0.98[AFR][1000 genomes]
rs4509154	1.00[TSI][hapmap]
rs4557559	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs4587199	0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4946321	1.00[AMR][1000 genomes]
rs4946324	0.99[AFR][1000 genomes]
rs5003341	1.00[EUR][1000 genomes]
rs55752923	1.00[EUR][1000 genomes]
rs56993874	1.00[EUR][1000 genomes]
rs58861108	1.00[EUR][1000 genomes]
rs60541620	1.00[EUR][1000 genomes]
rs61019727	1.00[EUR][1000 genomes]
rs6568998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6901514	1.00[EUR][1000 genomes]
rs6902543	1.00[MEX][hapmap]
rs6904369	1.00[MEX][hapmap]
rs6935478	1.00[EUR][1000 genomes]
rs6938511	1.00[MEX][hapmap]
rs73521541	1.00[EUR][1000 genomes]
rs73525652	1.00[EUR][1000 genomes]
rs73766425	1.00[EUR][1000 genomes]
rs73768145	1.00[EUR][1000 genomes]
rs7762210	1.00[MEX][hapmap]
rs7775102	1.00[EUR][1000 genomes]
rs7775110	1.00[EUR][1000 genomes]
rs9385033	0.86[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9387541	1.00[EUR][1000 genomes]
rs9401057	0.99[AFR][1000 genomes]
rs9489309	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118414600-118420600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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